RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 WWC3Q9ULE0 1092 aa24.45■■□□□ 1.5
GPC1-205ENST00000427506 USPL1Q5W0Q7 1092 aa24.44■■□□□ 1.5
GPC1-205ENST00000427506 SIPA1L3O60292 1781 aaPredicted RBP24.44■■□□□ 1.5
GPC1-205ENST00000427506 COL15A1P39059 1388 aa24.43■■□□□ 1.5
GPC1-205ENST00000427506 KCNQ3O43525 872 aa24.43■■□□□ 1.5
GPC1-205ENST00000427506 MAPK8IP3Q9UPT6 1336 aa24.42■■□□□ 1.5
GPC1-205ENST00000427506 PLEKHF1Q96S99 279 aa24.41■■□□□ 1.5
GPC1-205ENST00000427506 NARFQ9UHQ1 456 aa24.41■■□□□ 1.5
GPC1-205ENST00000427506 ZNF330Q9Y3S2 320 aaPredicted RBP24.41■■□□□ 1.5
GPC1-205ENST00000427506 MYBBP1AQ9BQG0 1328 aaKnown RBP24.4■■□□□ 1.5
GPC1-205ENST00000427506 CHD4Q14839 1912 aa24.4■■□□□ 1.5
GPC1-205ENST00000427506 ZEB1P37275 1124 aaPredicted RBP24.4■■□□□ 1.5
GPC1-205ENST00000427506 TGFB2P61812 414 aa24.4■■□□□ 1.5
GPC1-205ENST00000427506 A0A087WZG4 1122 aa24.39■■□□□ 1.49
GPC1-205ENST00000427506 NFE2L2Q16236 605 aa24.39■■□□□ 1.49
GPC1-205ENST00000427506 NPM2Q86SE8 214 aaKnown RBP24.39■■□□□ 1.49
GPC1-205ENST00000427506 C10orf71Q711Q0 1435 aa24.38■■□□□ 1.49
GPC1-205ENST00000427506 DDR1Q08345 913 aa24.38■■□□□ 1.49
GPC1-205ENST00000427506 TAF7Q15545 349 aaPredicted RBP24.38■■□□□ 1.49
GPC1-205ENST00000427506 ZNF784Q8NCA9 323 aaPredicted RBP24.38■■□□□ 1.49
GPC1-205ENST00000427506 A0A0G2JLW4 131 aa24.37■■□□□ 1.49
GPC1-205ENST00000427506 EIF5P55010 431 aaKnown RBP24.37■■□□□ 1.49
GPC1-205ENST00000427506 A1BGP04217 495 aa24.36■■□□□ 1.49
GPC1-205ENST00000427506 TM4SF1P30408 202 aa24.36■■□□□ 1.49
GPC1-205ENST00000427506 PXDNLA1KZ92 1463 aa24.36■■□□□ 1.49
GPC1-205ENST00000427506 POLRMTO00411 1230 aaKnown RBP24.35■■□□□ 1.49
GPC1-205ENST00000427506 SNRPA1P09661 255 aaKnown RBP24.35■■□□□ 1.49
GPC1-205ENST00000427506 DPEP1P16444 411 aa24.34■■□□□ 1.49
GPC1-205ENST00000427506 IL6STP40189 918 aaPredicted RBP24.34■■□□□ 1.49
GPC1-205ENST00000427506 NFIXQ14938 502 aa24.34■■□□□ 1.49
GPC1-205ENST00000427506 MIS18AQ9NYP9 233 aa24.34■■□□□ 1.49
GPC1-205ENST00000427506 USP16Q9Y5T5 823 aa24.34■■□□□ 1.49
GPC1-205ENST00000427506 KIF13BQ9NQT8 1826 aa24.33■■□□□ 1.49
GPC1-205ENST00000427506 PNISRQ8TF01 805 aaKnown RBP24.33■■□□□ 1.49
GPC1-205ENST00000427506 BCL2L12Q9HB09 334 aa24.33■■□□□ 1.49
GPC1-205ENST00000427506 TBC1D2BQ9UPU7 963 aa24.33■■□□□ 1.49
GPC1-205ENST00000427506 BCS1LQ9Y276 419 aa24.33■■□□□ 1.49
GPC1-205ENST00000427506 UTRNP46939 3433 aa24.32■■□□□ 1.48
GPC1-205ENST00000427506 PRAMEF22A3QJZ6 481 aa24.32■■□□□ 1.48
GPC1-205ENST00000427506 BICDL1Q6ZP65 573 aa24.32■■□□□ 1.48
GPC1-205ENST00000427506 WDR43Q15061 677 aaKnown RBP eCLIP24.31■■□□□ 1.48
GPC1-205ENST00000427506 THUMPD2Q9BTF0 503 aaKnown RBP24.31■■□□□ 1.48
GPC1-205ENST00000427506 N4BP2Q86UW6 1770 aaPredicted RBP24.31■■□□□ 1.48
GPC1-205ENST00000427506 DLG5Q8TDM6 1919 aa24.29■■□□□ 1.48
GPC1-205ENST00000427506 SERPINB2P05120 415 aa24.29■■□□□ 1.48
GPC1-205ENST00000427506 PIP4K2AP48426 406 aaPredicted RBP24.29■■□□□ 1.48
GPC1-205ENST00000427506 RIPK4P57078 832 aa24.29■■□□□ 1.48
GPC1-205ENST00000427506 PRKRIP1Q9H875 184 aaPredicted RBP24.29■■□□□ 1.48
GPC1-205ENST00000427506 KIAA1551Q9HCM1 1747 aa24.28■■□□□ 1.48
GPC1-205ENST00000427506 DZIP3Q86Y13 1208 aaKnown RBP24.27■■□□□ 1.48
GPC1-205ENST00000427506 CCDC146Q8IYE0 955 aa24.27■■□□□ 1.48
GPC1-205ENST00000427506 PIM2Q9P1W9 311 aa24.27■■□□□ 1.48
GPC1-205ENST00000427506 TBC1D9BQ66K14 1250 aa24.26■■□□□ 1.47
GPC1-205ENST00000427506 KCNA3P22001 575 aa24.25■■□□□ 1.47
GPC1-205ENST00000427506 CHRNA5P30532 468 aa24.25■■□□□ 1.47
GPC1-205ENST00000427506 TMPOP42166 694 aaKnown RBP24.25■■□□□ 1.47
GPC1-205ENST00000427506 LMOD3Q0VAK6 560 aa24.25■■□□□ 1.47
GPC1-205ENST00000427506 GOLGB1Q14789 3259 aaKnown RBP24.25■■□□□ 1.47
GPC1-205ENST00000427506 RRP7AQ9Y3A4 280 aaKnown RBP24.24■■□□□ 1.47
GPC1-205ENST00000427506 CAMTA2O94983 1202 aa24.23■■□□□ 1.47
GPC1-205ENST00000427506 NEUROD2Q15784 382 aa24.23■■□□□ 1.47
GPC1-205ENST00000427506 DALRD3Q5D0E6 543 aaKnown RBP24.23■■□□□ 1.47
GPC1-205ENST00000427506 ARHGAP27Q6ZUM4 889 aa24.23■■□□□ 1.47
GPC1-205ENST00000427506 RUNDC1Q96C34 613 aa24.23■■□□□ 1.47
GPC1-205ENST00000427506 EIF4A1P60842 406 aaKnown RBP24.22■■□□□ 1.47
GPC1-205ENST00000427506 SETDB2Q96T68 719 aa24.22■■□□□ 1.47
GPC1-205ENST00000427506 TSPYL4Q9UJ04 414 aa24.22■■□□□ 1.47
GPC1-205ENST00000427506 SCN7AQ01118 1682 aa24.21■■□□□ 1.47
GPC1-205ENST00000427506 NBPF26B4DH59 902 aa24.21■■□□□ 1.47
GPC1-205ENST00000427506 NPHP1O15259 732 aa24.21■■□□□ 1.47
GPC1-205ENST00000427506 GIGYF1O75420 1035 aaPredicted RBP24.21■■□□□ 1.47
GPC1-205ENST00000427506 NBPF10Q6P3W6 841 aaKnown RBP24.21■■□□□ 1.47
GPC1-205ENST00000427506 NBPF15Q8N660 670 aa24.21■■□□□ 1.47
GPC1-205ENST00000427506 ADAMTS8Q9UP79 889 aa24.21■■□□□ 1.47
GPC1-205ENST00000427506 CARMIL3Q8ND23 1372 aa24.2■■□□□ 1.46
GPC1-205ENST00000427506 AFDNP55196 1824 aaKnown RBP24.2■■□□□ 1.46
GPC1-205ENST00000427506 ZNF652Q9Y2D9 606 aa24.2■■□□□ 1.46
GPC1-205ENST00000427506 KDM3BQ7LBC6 1761 aa24.2■■□□□ 1.46
GPC1-205ENST00000427506 ATP10DQ9P241 1426 aa24.18■■□□□ 1.46
GPC1-205ENST00000427506 NRXN2Q9P2S2 1712 aa24.18■■□□□ 1.46
GPC1-205ENST00000427506 C2CD5Q86YS7 1000 aa24.18■■□□□ 1.46
GPC1-205ENST00000427506 NGEFQ8N5V2 710 aa24.18■■□□□ 1.46
GPC1-205ENST00000427506 H0YIN7 160 aa24.17■■□□□ 1.46
GPC1-205ENST00000427506 CLEC4GQ6UXB4 293 aa24.17■■□□□ 1.46
GPC1-205ENST00000427506 PRR5LQ6MZQ0 368 aa24.16■■□□□ 1.46
GPC1-205ENST00000427506 CCDC24Q8N4L8 307 aa24.16■■□□□ 1.46
GPC1-205ENST00000427506 LAMB4A4D0S4 1761 aa24.16■■□□□ 1.46
GPC1-205ENST00000427506 BRCA1P38398 1863 aaKnown RBP24.15■■□□□ 1.46
GPC1-205ENST00000427506 PDE6BP35913 854 aa24.15■■□□□ 1.46
GPC1-205ENST00000427506 CNBD1Q8NA66 436 aa24.15■■□□□ 1.46
GPC1-205ENST00000427506 ZNF526Q8TF50 670 aaPredicted RBP24.15■■□□□ 1.46
GPC1-205ENST00000427506 BABAM1Q9NWV8 329 aa24.15■■□□□ 1.46
GPC1-205ENST00000427506 ZNF316A6NFI3 1004 aaPredicted RBP24.14■■□□□ 1.45
GPC1-205ENST00000427506 MYL6BP14649 208 aa24.14■■□□□ 1.45
GPC1-205ENST00000427506 ST5P78524 1137 aa24.14■■□□□ 1.45
GPC1-205ENST00000427506 BRIP1Q9BX63 1249 aa24.14■■□□□ 1.45
GPC1-205ENST00000427506 GPBP1L1Q9HC44 474 aaPredicted RBP24.14■■□□□ 1.45
GPC1-205ENST00000427506 LAS1LQ9Y4W2 734 aaKnown RBP24.14■■□□□ 1.45
GPC1-205ENST00000427506 ADCY9O60503 1353 aa24.14■■□□□ 1.45
GPC1-205ENST00000427506 BCORQ6W2J9 1755 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms