RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TMX4Q9H1E5 349 aaPredicted RBP11.82□□□□□ -0.52
USP54-205ENST00000424265 TNNT1P13805 278 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 SLC4A10Q6U841 1118 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 CABLES1Q8TDN4 633 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 YY1AP1Q9H869 796 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 HSCBQ8IWL3 235 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 STARD3NLO95772 234 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 DCAF5Q96JK2 942 aa11.82□□□□□ -0.52
USP54-205ENST00000424265 USHBP1Q8N6Y0 703 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 SMARCC1Q92922 1105 aaPredicted RBP11.81□□□□□ -0.52
USP54-205ENST00000424265 BTG4Q9NY30 223 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 HSP90AB3PQ58FF7 597 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 C8orf37Q96NL8 207 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 SSR1P43307 286 aaKnown RBP11.81□□□□□ -0.52
USP54-205ENST00000424265 KIF6Q6ZMV9 814 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 DDB1Q16531 1140 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 FMNL2Q96PY5 1086 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 EFCC1Q9HA90 598 aa11.81□□□□□ -0.52
USP54-205ENST00000424265 CTR9Q6PD62 1173 aa11.8□□□□□ -0.52
USP54-205ENST00000424265 CENPQQ7L2Z9 268 aaPredicted RBP11.8□□□□□ -0.52
USP54-205ENST00000424265 KIF1AQ12756 1690 aa11.8□□□□□ -0.52
USP54-205ENST00000424265 LOC102724159A0A0B4J2E5 919 aa11.8□□□□□ -0.52
USP54-205ENST00000424265 TDO2P48775 406 aa11.8□□□□□ -0.52
USP54-205ENST00000424265 PWP2Q15269 919 aaKnown RBP11.8□□□□□ -0.52
USP54-205ENST00000424265 GNAI3P08754 354 aa11.79□□□□□ -0.52
USP54-205ENST00000424265 CCT4P50991 539 aaKnown RBP11.79□□□□□ -0.52
USP54-205ENST00000424265 JCADQ9P266 1359 aa11.79□□□□□ -0.52
USP54-205ENST00000424265 RIC3Q7Z5B4 369 aa11.79□□□□□ -0.52
USP54-205ENST00000424265 RBM42Q9BTD8 480 aaKnown RBP11.79□□□□□ -0.52
USP54-205ENST00000424265 MST1RQ04912 1400 aa11.79□□□□□ -0.52
USP54-205ENST00000424265 GPATCH3Q96I76 525 aa11.79□□□□□ -0.52
USP54-205ENST00000424265 SLC20A2Q08357 652 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 NOM1Q5C9Z4 860 aaKnown RBP11.78□□□□□ -0.52
USP54-205ENST00000424265 HSP90AB4PQ58FF6 505 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 CARD10Q9BWT7 1032 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 C9orf78Q9NZ63 289 aaPredicted RBP11.78□□□□□ -0.52
USP54-205ENST00000424265 IGSF1Q8N6C5 1336 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 GABPB1Q06547 395 aaPredicted RBP11.78□□□□□ -0.52
USP54-205ENST00000424265 MCM10Q7L590 875 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 CDCA7LQ96GN5 454 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 THRAP3Q9Y2W1 955 aaKnown RBP11.78□□□□□ -0.52
USP54-205ENST00000424265 SPATA31A6Q5VVP1 1343 aa11.78□□□□□ -0.52
USP54-205ENST00000424265 KIAA0232Q92628 1395 aa11.77□□□□□ -0.52
USP54-205ENST00000424265 MCM5P33992 734 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 GRIPAP1Q4V328 841 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 CLUAP1Q96AJ1 413 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 PRIMPOLQ96LW4 560 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 WDR17Q8IZU2 1322 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 OVOS2A0A0J9YW53 1432 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 OVOS2Q6IE36 1432 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 TSR2Q969E8 191 aaKnown RBP11.77□□□□□ -0.53
USP54-205ENST00000424265 DEF6Q9H4E7 631 aa11.77□□□□□ -0.53
USP54-205ENST00000424265 FBLN1P23142 703 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 MTHFSDQ2M296 383 aaKnown RBP11.76□□□□□ -0.53
USP54-205ENST00000424265 DUSP27Q5VZP5 1158 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 DIAPH3Q9NSV4 1193 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 SOS2Q07890 1332 aaPredicted RBP11.76□□□□□ -0.53
USP54-205ENST00000424265 HOXB7P09629 217 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 MPRIPQ6WCQ1 1025 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 DDX17Q92841 729 aaKnown RBP11.76□□□□□ -0.53
USP54-205ENST00000424265 HYPKQ9NX55 129 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 PTPRCP08575 1304 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 BCL2L13Q9BXK5 485 aa11.76□□□□□ -0.53
USP54-205ENST00000424265 USP19O94966 1318 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 HS1BP3Q53T59 392 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 MMP14P50281 582 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 RBM28Q9NW13 759 aaKnown RBP11.75□□□□□ -0.53
USP54-205ENST00000424265 DBF4Q9UBU7 674 aaPredicted RBP11.75□□□□□ -0.53
USP54-205ENST00000424265 ERBB3P21860 1342 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 SLC4A2P04920 1241 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 SNRPA1P09661 255 aaKnown RBP11.75□□□□□ -0.53
USP54-205ENST00000424265 CEP120Q8N960 986 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 LRRC7Q96NW7 1537 aa11.75□□□□□ -0.53
USP54-205ENST00000424265 ATF7IPQ6VMQ6 1270 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 USP21Q9UK80 565 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 PNPLA6Q8IY17 1366 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 ZNF772Q68DY9 489 aaPredicted RBP11.74□□□□□ -0.53
USP54-205ENST00000424265 FEZ1Q99689 392 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 OGFRQ9NZT2 677 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 TRPC5Q9UL62 973 aaPredicted RBP11.74□□□□□ -0.53
USP54-205ENST00000424265 A0A087WZG4 1122 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 ZNF652Q9Y2D9 606 aa11.74□□□□□ -0.53
USP54-205ENST00000424265 XRN1Q8IZH2 1706 aaKnown RBP11.74□□□□□ -0.53
USP54-205ENST00000424265 RNMTO43148 476 aaKnown RBP11.73□□□□□ -0.53
USP54-205ENST00000424265 NBPF6Q5VWK0 638 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 NBPF4Q96M43 638 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 CWC15Q9P013 229 aaKnown RBP11.73□□□□□ -0.53
USP54-205ENST00000424265 NWD1Q149M9 1564 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 FAM43BQ6ZT52 329 aaPredicted RBP11.73□□□□□ -0.53
USP54-205ENST00000424265 MYRIPQ8NFW9 859 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 ERVV-2B6SEH9 535 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 TEX35Q5T0J7 233 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 ARHGAP45Q92619 1136 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 RASSF4Q9H2L5 321 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 DDX49Q9Y6V7 483 aaKnown RBP11.73□□□□□ -0.53
USP54-205ENST00000424265 MNS1Q8NEH6 495 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 TOMM22Q9NS69 142 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 NCAPD2Q15021 1401 aa11.73□□□□□ -0.53
USP54-205ENST00000424265 UBTFL1P0CB47 393 aaPredicted RBP11.73□□□□□ -0.53
USP54-205ENST00000424265 CRBNQ96SW2 442 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms