RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SHTN1A0MZ66 631 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 ZSCAN12O43309 604 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 TTF1Q15361 905 aaPredicted RBP7.93□□□□□ -1.14
SCN1A-204ENST00000423058 NGLY1Q96IV0 654 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.93□□□□□ -1.14
SCN1A-204ENST00000423058 SYNCQ9H7C4 482 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 ERICH3Q5RHP9 1530 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 LDHCP07864 332 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 PDE4BQ07343 736 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 CDC5LQ99459 802 aaKnown RBP7.93□□□□□ -1.14
SCN1A-204ENST00000423058 GIMAP7Q8NHV1 300 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 ZNF428Q96B54 188 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 TRAK2O60296 914 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 TMEM132EQ6IEE7 984 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 TBC1D5Q92609 795 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 HDAC9Q9UKV0 1011 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 CASQ1P31415 396 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 C6orf163Q5TEZ5 329 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 ZNF354CQ86Y25 554 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 TEX13AQ9BXU3 409 aaPredicted RBP7.93□□□□□ -1.14
SCN1A-204ENST00000423058 HFM1A2PYH4 1435 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 SSRP1Q08945 709 aaKnown RBP7.93□□□□□ -1.14
SCN1A-204ENST00000423058 NUP62CLQ9H1M0 184 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 TCP11L1Q9NUJ3 509 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 ATAD2Q6PL18 1390 aa7.93□□□□□ -1.14
SCN1A-204ENST00000423058 PAFAH1B1P43034 410 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 CFAP100Q494V2 611 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 MICALCLQ6ZW33 695 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 PLCD3Q8N3E9 789 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 ZGPATQ8N5A5 531 aaKnown RBP7.92□□□□□ -1.14
SCN1A-204ENST00000423058 BICD1Q96G01 975 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 ALS2CR12Q96Q35 445 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 ODF2LQ9ULJ1 636 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 SLC12A7Q9Y666 1083 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC102AQ96A19 550 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 STX6O43752 255 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 DDX46Q7L014 1031 aaKnown RBP7.92□□□□□ -1.14
SCN1A-204ENST00000423058 SPINK5Q9NQ38 1064 aaPredicted RBP7.92□□□□□ -1.14
SCN1A-204ENST00000423058 MACROD2A1Z1Q3 448 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC194A0A1B0GVG4 234 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 UBE4AQ14139 1066 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 PDE3AQ14432 1141 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 CWC27Q6UX04 472 aaKnown RBP7.92□□□□□ -1.14
SCN1A-204ENST00000423058 WDR63Q8IWG1 891 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 RFC4P35249 363 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 TAF12Q16514 161 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 CCDC14Q49A88 953 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 TMCO3Q6UWJ1 677 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 PPP1R14CQ8TAE6 165 aa7.92□□□□□ -1.14
SCN1A-204ENST00000423058 JAKMIP1Q96N16 626 aaKnown RBP7.92□□□□□ -1.14
SCN1A-204ENST00000423058 DDX11Q96FC9 970 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 FGD5Q6ZNL6 1462 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 PRC1O43663 620 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 RFX1P22670 979 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 CKAP2LQ8IYA6 745 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 TCP11L2Q8N4U5 519 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 OGFOD1Q8N543 542 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 ERMNQ8TAM6 284 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 PKNOX2Q96KN3 472 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 ZMYND15Q9H091 742 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 RPGRIP1LQ68CZ1 1315 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 C6orf229H3BNL8 230 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 PPP1R42Q7Z4L9 355 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 KIF1BPQ96EK5 621 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 PUF60Q9UHX1 559 aaKnown RBP7.91□□□□□ -1.14
SCN1A-204ENST00000423058 GRIN2BQ13224 1484 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 RANBP6O60518 1105 aaKnown RBP7.91□□□□□ -1.14
SCN1A-204ENST00000423058 GAS8O95995 478 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 NLRP5P59047 1200 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 CEP135Q66GS9 1140 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 HMGB1P1B2RPK0 211 aaPredicted RBP7.91□□□□□ -1.14
SCN1A-204ENST00000423058 ZNF213O14771 459 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 EHBP1L1Q8N3D4 1523 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 PLEKHH1Q9ULM0 1364 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 MAP4K4O95819 1239 aaPredicted RBP7.91□□□□□ -1.14
SCN1A-204ENST00000423058 PRPF31Q8WWY3 499 aaKnown RBP7.91□□□□□ -1.14
SCN1A-204ENST00000423058 CLEC11AQ9Y240 323 aa7.91□□□□□ -1.14
SCN1A-204ENST00000423058 CTAGE5O15320 804 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 SNX16P57768 344 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 FAM107BQ9H098 131 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 FAM135AQ9P2D6 1515 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 POLA1P09884 1462 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-204ENST00000423058 K7ELQ4 463 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-204ENST00000423058 CASTP20810 708 aaKnown RBP7.9□□□□□ -1.14
SCN1A-204ENST00000423058 KANK3Q6NY19 840 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 LIG1P18858 919 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 MAP3K11Q16584 847 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 HYPKQ9NX55 129 aa7.9□□□□□ -1.14
SCN1A-204ENST00000423058 ARL1P40616 181 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-204ENST00000423058 EXOC5O00471 708 aa7.9□□□□□ -1.15
SCN1A-204ENST00000423058 CCDC175P0C221 793 aa7.9□□□□□ -1.15
SCN1A-204ENST00000423058 NUP88Q99567 741 aaPredicted RBP7.9□□□□□ -1.15
SCN1A-204ENST00000423058 NOC2LQ9Y3T9 749 aaKnown RBP7.9□□□□□ -1.15
SCN1A-204ENST00000423058 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.9□□□□□ -1.15
SCN1A-204ENST00000423058 POLR3GO15318 223 aaPredicted RBP7.9□□□□□ -1.15
SCN1A-204ENST00000423058 GLRX3O76003 335 aaKnown RBP7.9□□□□□ -1.15
SCN1A-204ENST00000423058 BMS1Q14692 1282 aaKnown RBP7.9□□□□□ -1.15
SCN1A-204ENST00000423058 ATAD2BQ9ULI0 1458 aa7.9□□□□□ -1.15
SCN1A-204ENST00000423058 YEATS4O95619 227 aa7.89□□□□□ -1.15
SCN1A-204ENST00000423058 HAUS2Q9NVX0 235 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms