RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TRIM6-TRIM34B2RNG4 842 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 HOXB7P09629 217 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 HMGN5P82970 282 aaKnown RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 FKBP5Q13451 457 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 MTHFSDQ2M296 383 aaKnown RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 SSH3Q8TE77 659 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 HDAC5Q9UQL6 1122 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 R3HCC1Q9Y3T6 440 aaKnown RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 RAD50Q92878 1312 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 MAP3K5Q99683 1374 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 DIP2AQ14689 1571 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 UBTFL1P0CB47 393 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-207ENST00000422797 HSP90AB2PQ58FF8 381 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 PRIMPOLQ96LW4 560 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 EXOC6BQ9Y2D4 811 aa13.29□□□□□ -0.28
LIMS1-207ENST00000422797 GNAT3A8MTJ3 354 aa13.28□□□□□ -0.28
LIMS1-207ENST00000422797 UBE2HP62256 183 aa13.28□□□□□ -0.28
LIMS1-207ENST00000422797 G2E3Q7L622 706 aa13.28□□□□□ -0.28
LIMS1-207ENST00000422797 CNTROBQ8N137 903 aa13.28□□□□□ -0.28
LIMS1-207ENST00000422797 RUFY2Q8WXA3 655 aa13.28□□□□□ -0.28
LIMS1-207ENST00000422797 RILPL2Q969X0 211 aa13.28□□□□□ -0.28
LIMS1-207ENST00000422797 USP42Q9H9J4 1324 aaKnown RBP13.27□□□□□ -0.28
LIMS1-207ENST00000422797 ANKARQ7Z5J8 1434 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 UQCRHLA0A096LP55 91 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 UQCRHP07919 91 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 POLA2Q14181 598 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 VSIG10Q8N0Z9 540 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 KIF1BPQ96EK5 621 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 ZSCAN31Q96LW9 406 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-207ENST00000422797 CRYBG1Q9Y4K1 1723 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 TTC41PQ6P2S7 1318 aa13.27□□□□□ -0.29
LIMS1-207ENST00000422797 RPAP1Q9BWH6 1393 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-207ENST00000422797 F6X3S4 739 aa13.26□□□□□ -0.29
LIMS1-207ENST00000422797 ZSCAN22P10073 491 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-207ENST00000422797 SP7Q8TDD2 431 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-207ENST00000422797 SH2B1Q9NRF2 756 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-207ENST00000422797 PALD1Q9ULE6 856 aa13.26□□□□□ -0.29
LIMS1-207ENST00000422797 LIMCH1Q9UPQ0 1083 aa13.26□□□□□ -0.29
LIMS1-207ENST00000422797 SGSM2O43147 1006 aa13.25□□□□□ -0.29
LIMS1-207ENST00000422797 AMPHP49418 695 aa13.25□□□□□ -0.29
LIMS1-207ENST00000422797 NCKAP5LQ9HCH0 1330 aa13.25□□□□□ -0.29
LIMS1-207ENST00000422797 PNMA6EA0A0J9YXQ4 647 aa13.24□□□□□ -0.29
LIMS1-207ENST00000422797 XPCQ01831 940 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-207ENST00000422797 TAF7Q15545 349 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-207ENST00000422797 USP48Q86UV5 1035 aa13.24□□□□□ -0.29
LIMS1-207ENST00000422797 PIBF1Q8WXW3 757 aa13.24□□□□□ -0.29
LIMS1-207ENST00000422797 TM6SF1Q9BZW5 370 aa13.24□□□□□ -0.29
LIMS1-207ENST00000422797 LRRFIP2Q9Y608 721 aaKnown RBP13.24□□□□□ -0.29
LIMS1-207ENST00000422797 CEP170BQ9Y4F5 1589 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-207ENST00000422797 CAPN15O75808 1086 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 GPATCH3Q96I76 525 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 TTC14Q96N46 770 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 NSFL1CQ9UNZ2 370 aaKnown RBP13.23□□□□□ -0.29
LIMS1-207ENST00000422797 ADGRL3Q9HAR2 1447 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 HIP1O00291 1037 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 STX6O43752 255 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 GLRX3O76003 335 aaKnown RBP13.23□□□□□ -0.29
LIMS1-207ENST00000422797 ERC1Q8IUD2 1116 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 MYRIPQ8NFW9 859 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 PKNOX2Q96KN3 472 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 EYA1Q99502 592 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 USP44Q9H0E7 712 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 SMC3Q9UQE7 1217 aa13.23□□□□□ -0.29
LIMS1-207ENST00000422797 GOLGA6L6A8MZA4 724 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 PIK3C2AO00443 1686 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 GTF2F1P35269 517 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMS1-207ENST00000422797 MED1Q15648 1581 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-207ENST00000422797 CCDC171Q6TFL3 1326 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 PI4K2BQ8TCG2 481 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 RHPN1Q8TCX5 695 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 USP25Q9UHP3 1055 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 SNX14Q9Y5W7 946 aa13.22□□□□□ -0.29
LIMS1-207ENST00000422797 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMS1-207ENST00000422797 F13A1P00488 732 aa13.21□□□□□ -0.29
LIMS1-207ENST00000422797 VPS53Q5VIR6 699 aa13.21□□□□□ -0.29
LIMS1-207ENST00000422797 RNF214Q8ND24 703 aa13.21□□□□□ -0.29
LIMS1-207ENST00000422797 KCNB2Q92953 911 aa13.21□□□□□ -0.29
LIMS1-207ENST00000422797 UPF3BQ9BZI7 483 aaKnown RBP13.21□□□□□ -0.29
LIMS1-207ENST00000422797 LSG1Q9H089 658 aaKnown RBP13.21□□□□□ -0.29
LIMS1-207ENST00000422797 ZMYND15Q9H091 742 aa13.21□□□□□ -0.29
LIMS1-207ENST00000422797 SPTLC3Q9NUV7 552 aa13.21□□□□□ -0.29
LIMS1-207ENST00000422797 NWD1Q149M9 1564 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 SLIT1O75093 1534 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 FOXO3O43524 673 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 SURF6O75683 361 aaKnown RBP13.2□□□□□ -0.3
LIMS1-207ENST00000422797 PDCP20941 246 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 MTX1Q13505 466 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 HDGFL1Q5TGJ6 251 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 FOXD4L5Q5VV16 416 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-207ENST00000422797 FOXD4L4Q8WXT5 416 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-207ENST00000422797 MIS18AQ9NYP9 233 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 EID1Q9Y6B2 187 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 OVOS2A0A0G2JMS6 1433 aa13.2□□□□□ -0.3
LIMS1-207ENST00000422797 NPM3O75607 178 aaKnown RBP13.19□□□□□ -0.3
LIMS1-207ENST00000422797 PPP1R42Q7Z4L9 355 aa13.19□□□□□ -0.3
LIMS1-207ENST00000422797 DIAPH3Q9NSV4 1193 aa13.19□□□□□ -0.3
LIMS1-207ENST00000422797 FAM13BQ9NYF5 915 aa13.19□□□□□ -0.3
LIMS1-207ENST00000422797 TBX22Q9Y458 520 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms