RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 COL15A1P39059 1388 aa20.27■□□□□ 0.84
UBXN4-203ENST00000416538 DDR1Q08345 913 aa20.27■□□□□ 0.84
UBXN4-203ENST00000416538 FKBP8Q14318 412 aa20.27■□□□□ 0.84
UBXN4-203ENST00000416538 NLGN1Q8N2Q7 840 aa20.27■□□□□ 0.84
UBXN4-203ENST00000416538 KDM3BQ7LBC6 1761 aa20.26■□□□□ 0.83
UBXN4-203ENST00000416538 ZNF496Q96IT1 587 aaPredicted RBP20.26■□□□□ 0.83
UBXN4-203ENST00000416538 RNF39Q9H2S5 420 aa20.26■□□□□ 0.83
UBXN4-203ENST00000416538 U2AF1L5P0DN76 240 aaPredicted RBP20.25■□□□□ 0.83
UBXN4-203ENST00000416538 U2AF1Q01081 240 aaKnown RBP eCLIP20.25■□□□□ 0.83
UBXN4-203ENST00000416538 LAMB4A4D0S4 1761 aa20.25■□□□□ 0.83
UBXN4-203ENST00000416538 ANKRD31Q8N7Z5 1873 aa20.24■□□□□ 0.83
UBXN4-203ENST00000416538 ADCY9O60503 1353 aa20.24■□□□□ 0.83
UBXN4-203ENST00000416538 HEG1Q9ULI3 1381 aa20.24■□□□□ 0.83
UBXN4-203ENST00000416538 KCNQ3O43525 872 aa20.24■□□□□ 0.83
UBXN4-203ENST00000416538 GRIN3BO60391 1043 aa20.24■□□□□ 0.83
UBXN4-203ENST00000416538 TEFQ10587 303 aa20.23■□□□□ 0.83
UBXN4-203ENST00000416538 ZNF790Q6PG37 636 aa20.23■□□□□ 0.83
UBXN4-203ENST00000416538 VSIG10Q8N0Z9 540 aa20.23■□□□□ 0.83
UBXN4-203ENST00000416538 BCL2L12Q9HB09 334 aa20.22■□□□□ 0.83
UBXN4-203ENST00000416538 NUDCQ9Y266 331 aa20.22■□□□□ 0.83
UBXN4-203ENST00000416538 NPM3O75607 178 aaKnown RBP20.21■□□□□ 0.83
UBXN4-203ENST00000416538 USPL1Q5W0Q7 1092 aa20.21■□□□□ 0.83
UBXN4-203ENST00000416538 TTC5Q8N0Z6 440 aa20.21■□□□□ 0.83
UBXN4-203ENST00000416538 COL11A2P13942 1736 aaPredicted RBP20.21■□□□□ 0.83
UBXN4-203ENST00000416538 ATP10DQ9P241 1426 aa20.2■□□□□ 0.82
UBXN4-203ENST00000416538 A0A0G2JLW4 131 aa20.2■□□□□ 0.82
UBXN4-203ENST00000416538 POLRMTO00411 1230 aaKnown RBP20.2■□□□□ 0.82
UBXN4-203ENST00000416538 FCHSD2O94868 740 aa20.2■□□□□ 0.82
UBXN4-203ENST00000416538 DCTN1Q14203 1278 aa20.2■□□□□ 0.82
UBXN4-203ENST00000416538 MCM10Q7L590 875 aa20.2■□□□□ 0.82
UBXN4-203ENST00000416538 PARP3Q9Y6F1 533 aa20.2■□□□□ 0.82
UBXN4-203ENST00000416538 DPEP1P16444 411 aa20.19■□□□□ 0.82
UBXN4-203ENST00000416538 TM4SF1P30408 202 aa20.19■□□□□ 0.82
UBXN4-203ENST00000416538 CANXP27824 592 aaKnown RBP20.18■□□□□ 0.82
UBXN4-203ENST00000416538 NARFQ9UHQ1 456 aa20.18■□□□□ 0.82
UBXN4-203ENST00000416538 CARMIL3Q8ND23 1372 aa20.18■□□□□ 0.82
UBXN4-203ENST00000416538 PRAMEF22A3QJZ6 481 aa20.17■□□□□ 0.82
UBXN4-203ENST00000416538 KCNA3P22001 575 aa20.17■□□□□ 0.82
UBXN4-203ENST00000416538 EIF5P55010 431 aaKnown RBP20.17■□□□□ 0.82
UBXN4-203ENST00000416538 TGFB2P61812 414 aa20.17■□□□□ 0.82
UBXN4-203ENST00000416538 NFIXQ14938 502 aa20.17■□□□□ 0.82
UBXN4-203ENST00000416538 SBF1O95248 1867 aa20.17■□□□□ 0.82
UBXN4-203ENST00000416538 PLEKHF1Q96S99 279 aa20.16■□□□□ 0.82
UBXN4-203ENST00000416538 CACNA1SQ13698 1873 aa20.16■□□□□ 0.82
UBXN4-203ENST00000416538 BTBD11A6QL63 1104 aa20.15■□□□□ 0.82
UBXN4-203ENST00000416538 ZPR1O75312 459 aa20.15■□□□□ 0.82
UBXN4-203ENST00000416538 FMNL2Q96PY5 1086 aa20.15■□□□□ 0.82
UBXN4-203ENST00000416538 BCS1LQ9Y276 419 aa20.14■□□□□ 0.81
UBXN4-203ENST00000416538 STARD3NLO95772 234 aa20.13■□□□□ 0.81
UBXN4-203ENST00000416538 A1BGP04217 495 aa20.13■□□□□ 0.81
UBXN4-203ENST00000416538 CHRNA5P30532 468 aa20.13■□□□□ 0.81
UBXN4-203ENST00000416538 PIP4K2AP48426 406 aaPredicted RBP20.13■□□□□ 0.81
UBXN4-203ENST00000416538 DDX10Q13206 875 aaKnown RBP20.11■□□□□ 0.81
UBXN4-203ENST00000416538 RTF1Q92541 710 aaKnown RBP20.11■□□□□ 0.81
UBXN4-203ENST00000416538 USP16Q9Y5T5 823 aa20.11■□□□□ 0.81
UBXN4-203ENST00000416538 CCDC88AQ3V6T2 1871 aa20.11■□□□□ 0.81
UBXN4-203ENST00000416538 THUMPD2Q9BTF0 503 aaKnown RBP20.1■□□□□ 0.81
UBXN4-203ENST00000416538 ZNF330Q9Y3S2 320 aaPredicted RBP20.1■□□□□ 0.81
UBXN4-203ENST00000416538 ARFGEF2Q9Y6D5 1785 aa20.09■□□□□ 0.81
UBXN4-203ENST00000416538 HTATSF1O43719 755 aaKnown RBP20.09■□□□□ 0.81
UBXN4-203ENST00000416538 IL6STP40189 918 aaPredicted RBP20.09■□□□□ 0.81
UBXN4-203ENST00000416538 TBC1D9BQ66K14 1250 aa20.09■□□□□ 0.81
UBXN4-203ENST00000416538 TEX13AQ9BXU3 409 aaPredicted RBP20.09■□□□□ 0.81
UBXN4-203ENST00000416538 MIS18AQ9NYP9 233 aa20.09■□□□□ 0.81
UBXN4-203ENST00000416538 TBC1D2BQ9UPU7 963 aa20.09■□□□□ 0.81
UBXN4-203ENST00000416538 CAMTA2O94983 1202 aa20.08■□□□□ 0.81
UBXN4-203ENST00000416538 SERPINB2P05120 415 aa20.08■□□□□ 0.81
UBXN4-203ENST00000416538 NUP98P52948 1817 aa20.08■□□□□ 0.8
UBXN4-203ENST00000416538 C1QTNF8P60827 252 aa20.07■□□□□ 0.8
UBXN4-203ENST00000416538 NFE2L2Q16236 605 aa20.07■□□□□ 0.8
UBXN4-203ENST00000416538 BICDL1Q6ZP65 573 aa20.07■□□□□ 0.8
UBXN4-203ENST00000416538 TIAM2Q8IVF5 1701 aa20.07■□□□□ 0.8
UBXN4-203ENST00000416538 NBPF26B4DH59 902 aa20.06■□□□□ 0.8
UBXN4-203ENST00000416538 GIGYF1O75420 1035 aaPredicted RBP20.06■□□□□ 0.8
UBXN4-203ENST00000416538 RALBP1Q15311 655 aa20.06■□□□□ 0.8
UBXN4-203ENST00000416538 NBPF10Q6P3W6 841 aaKnown RBP20.06■□□□□ 0.8
UBXN4-203ENST00000416538 NBPF15Q8N660 670 aa20.06■□□□□ 0.8
UBXN4-203ENST00000416538 ZNF526Q8TF50 670 aaPredicted RBP20.06■□□□□ 0.8
UBXN4-203ENST00000416538 A0A087WZG4 1122 aa20.05■□□□□ 0.8
UBXN4-203ENST00000416538 PIM2Q9P1W9 311 aa20.05■□□□□ 0.8
UBXN4-203ENST00000416538 MYBBP1AQ9BQG0 1328 aaKnown RBP20.04■□□□□ 0.8
UBXN4-203ENST00000416538 TNRC6CQ9HCJ0 1690 aaKnown RBP20.04■□□□□ 0.8
UBXN4-203ENST00000416538 SNRPA1P09661 255 aaKnown RBP20.04■□□□□ 0.8
UBXN4-203ENST00000416538 TAF7Q15545 349 aaPredicted RBP20.04■□□□□ 0.8
UBXN4-203ENST00000416538 FER1L6Q2WGJ9 1857 aa20.04■□□□□ 0.8
UBXN4-203ENST00000416538 DALRD3Q5D0E6 543 aaKnown RBP20.03■□□□□ 0.8
UBXN4-203ENST00000416538 ARHGAP27Q6ZUM4 889 aa20.03■□□□□ 0.8
UBXN4-203ENST00000416538 CCDC24Q8N4L8 307 aa20.03■□□□□ 0.8
UBXN4-203ENST00000416538 SLX4Q8IY92 1834 aa20.03■□□□□ 0.8
UBXN4-203ENST00000416538 PRR5LQ6MZQ0 368 aa20.02■□□□□ 0.8
UBXN4-203ENST00000416538 DZIP3Q86Y13 1208 aaKnown RBP20.02■□□□□ 0.8
UBXN4-203ENST00000416538 MAPK8IP3Q9UPT6 1336 aa20.02■□□□□ 0.79
UBXN4-203ENST00000416538 GPBP1L1Q9HC44 474 aaPredicted RBP20.01■□□□□ 0.79
UBXN4-203ENST00000416538 DICER1Q9UPY3 1922 aaKnown RBP20■□□□□ 0.79
UBXN4-203ENST00000416538 NEFMP07197 916 aa19.99■□□□□ 0.79
UBXN4-203ENST00000416538 PRELPP51888 382 aa19.99■□□□□ 0.79
UBXN4-203ENST00000416538 EIF4A1P60842 406 aaKnown RBP19.99■□□□□ 0.79
UBXN4-203ENST00000416538 C1QBPQ07021 282 aaKnown RBP19.99■□□□□ 0.79
UBXN4-203ENST00000416538 RASSF7Q02833 373 aa19.98■□□□□ 0.79
UBXN4-203ENST00000416538 C2CD5Q86YS7 1000 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms