RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 RAB11FIP3O75154 756 aa13.37□□□□□ -0.27
PTPRF-204ENST00000412568 PDE1AP54750 535 aa13.37□□□□□ -0.27
PTPRF-204ENST00000412568 VPS53Q5VIR6 699 aa13.37□□□□□ -0.27
PTPRF-204ENST00000412568 DDX11Q96FC9 970 aa13.37□□□□□ -0.27
PTPRF-204ENST00000412568 INSRP06213 1382 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 ERICH2A1L162 156 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 TCEANC2Q96MN5 208 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 IFIT5Q13325 482 aaKnown RBP13.36□□□□□ -0.27
PTPRF-204ENST00000412568 LMBR1LQ6UX01 489 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 IL17REQ8NFR9 667 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 PLEKHF1Q96S99 279 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 PDRG1Q9NUG6 133 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 FAM13BQ9NYF5 915 aa13.36□□□□□ -0.27
PTPRF-204ENST00000412568 SBNO1A3KN83 1393 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 BECN2A8MW95 431 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 NASPP49321 788 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-204ENST00000412568 SMC5Q8IY18 1101 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 KLHDC4Q8TBB5 520 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 ECHDC1Q9NTX5 307 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 IFIT1P09914 478 aaKnown RBP13.35□□□□□ -0.27
PTPRF-204ENST00000412568 MCM2P49736 904 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 KSR2Q6VAB6 950 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 BTG4Q9NY30 223 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 ZNF521Q96K83 1311 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 UBAP1LF5GYI3 381 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 GRM8O00222 908 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 CCDC83Q8IWF9 413 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 MARCH6O60337 910 aa13.35□□□□□ -0.27
PTPRF-204ENST00000412568 PRKCSHP14314 528 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-204ENST00000412568 DDX46Q7L014 1031 aaKnown RBP13.35□□□□□ -0.27
PTPRF-204ENST00000412568 CIZ1Q9ULV3 898 aaPredicted RBP13.35□□□□□ -0.27
PTPRF-204ENST00000412568 ABCC3O15438 1527 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 GOLIM4O00461 696 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 LDHAL6AQ6ZMR3 332 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 ATP8B2P98198 1209 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 TRMT2AQ8IZ69 625 aaKnown RBP13.34□□□□□ -0.27
PTPRF-204ENST00000412568 C8orf37Q96NL8 207 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 DCTPP1Q9H773 170 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 PPP1R1BQ9UD71 204 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-204ENST00000412568 ADCY10Q96PN6 1610 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 SSFA2P28290 1259 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 LARP1BQ659C4 914 aaKnown RBP13.34□□□□□ -0.27
PTPRF-204ENST00000412568 HECW2Q9P2P5 1572 aa13.34□□□□□ -0.27
PTPRF-204ENST00000412568 CLSTN1O94985 981 aa13.33□□□□□ -0.27
PTPRF-204ENST00000412568 CWC25Q9NXE8 425 aaPredicted RBP13.33□□□□□ -0.27
PTPRF-204ENST00000412568 LRP2BPQ9P2M1 347 aa13.33□□□□□ -0.27
PTPRF-204ENST00000412568 DTNBO60941 627 aa13.33□□□□□ -0.28
PTPRF-204ENST00000412568 IL2RBP14784 551 aa13.33□□□□□ -0.28
PTPRF-204ENST00000412568 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-204ENST00000412568 PES1O00541 588 aaKnown RBP13.33□□□□□ -0.28
PTPRF-204ENST00000412568 NBPF7P0C2Y1 421 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-204ENST00000412568 CWC22Q9HCG8 908 aaKnown RBP13.33□□□□□ -0.28
PTPRF-204ENST00000412568 USP19O94966 1318 aa13.33□□□□□ -0.28
PTPRF-204ENST00000412568 GDPD2Q9HCC8 539 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 RAI14Q9P0K7 980 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 CLTCL1P53675 1640 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 GOLGA6L19H0YKK7 550 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 ZNF790Q6PG37 636 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 PLEKHM2Q8IWE5 1019 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 AMOTL1Q8IY63 956 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 IQSEC3Q9UPP2 1182 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-204ENST00000412568 EFCAB6Q5THR3 1501 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 PNMA6EA0A0J9YXQ4 647 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 TNPO1Q92973 898 aaKnown RBP13.32□□□□□ -0.28
PTPRF-204ENST00000412568 PIBF1Q8WXW3 757 aa13.32□□□□□ -0.28
PTPRF-204ENST00000412568 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.32□□□□□ -0.28
PTPRF-204ENST00000412568 MYOM2P54296 1465 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 A1BGP04217 495 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 IGHMBP2P38935 993 aaKnown RBP13.31□□□□□ -0.28
PTPRF-204ENST00000412568 FAM43AQ8N2R8 423 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 CCDC82Q8N4S0 544 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 LINS1Q8NG48 757 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 ZNF496Q96IT1 587 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-204ENST00000412568 SLAIN2Q9P270 581 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 HAND2P61296 217 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 GRPEL1Q9HAV7 217 aa13.31□□□□□ -0.28
PTPRF-204ENST00000412568 RAB11FIP4Q86YS3 637 aa13.3□□□□□ -0.28
PTPRF-204ENST00000412568 NUP133Q8WUM0 1156 aa13.3□□□□□ -0.28
PTPRF-204ENST00000412568 SDF4Q9BRK5 362 aa13.3□□□□□ -0.28
PTPRF-204ENST00000412568 KDM5AP29375 1690 aaKnown RBP13.3□□□□□ -0.28
PTPRF-204ENST00000412568 HELBQ8NG08 1087 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-204ENST00000412568 DCAF5Q96JK2 942 aa13.3□□□□□ -0.28
PTPRF-204ENST00000412568 TDO2P48775 406 aa13.29□□□□□ -0.28
PTPRF-204ENST00000412568 BCL11BQ9C0K0 894 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-204ENST00000412568 CCDC73Q6ZRK6 1079 aa13.29□□□□□ -0.28
PTPRF-204ENST00000412568 GUCY1B3Q02153 619 aa13.29□□□□□ -0.28
PTPRF-204ENST00000412568 DDB1Q16531 1140 aa13.29□□□□□ -0.28
PTPRF-204ENST00000412568 SIRT1Q96EB6 747 aa13.29□□□□□ -0.28
PTPRF-204ENST00000412568 LRRC2Q9BYS8 371 aa13.29□□□□□ -0.28
PTPRF-204ENST00000412568 ZPR1O75312 459 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 MBD3O95983 291 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 BICC1Q9H694 974 aaKnown RBP13.28□□□□□ -0.28
PTPRF-204ENST00000412568 PLXNC1O60486 1568 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 IQGAP3Q86VI3 1631 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 ATP6V1AP38606 617 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 AIDAQ96BJ3 306 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 CCDC34Q96HJ3 373 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 TRIM34Q9BYJ4 488 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 MINDY4BA8MYZ0 360 aa13.28□□□□□ -0.28
PTPRF-204ENST00000412568 DDX21Q9NR30 783 aaKnown RBP eCLIP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms