RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 C1QTNF8P60827 252 aa14.53□□□□□ -0.08
LINC00539-201ENST00000411525 AK7Q96M32 723 aa14.53□□□□□ -0.08
LINC00539-201ENST00000411525 CD2APQ9Y5K6 639 aa14.53□□□□□ -0.08
LINC00539-201ENST00000411525 RNMTO43148 476 aaKnown RBP14.52□□□□□ -0.09
LINC00539-201ENST00000411525 IFNL2Q8IZJ0 200 aa14.52□□□□□ -0.09
LINC00539-201ENST00000411525 BABAM1Q9NWV8 329 aa14.52□□□□□ -0.09
LINC00539-201ENST00000411525 TSPYL4Q9UJ04 414 aa14.52□□□□□ -0.09
LINC00539-201ENST00000411525 GIGYF1O75420 1035 aaPredicted RBP14.51□□□□□ -0.09
LINC00539-201ENST00000411525 HSP90AB1P08238 724 aaKnown RBP14.51□□□□□ -0.09
LINC00539-201ENST00000411525 RARSP54136 660 aaKnown RBP14.51□□□□□ -0.09
LINC00539-201ENST00000411525 IRX6P78412 446 aaPredicted RBP14.51□□□□□ -0.09
LINC00539-201ENST00000411525 MSL1Q68DK7 614 aa14.51□□□□□ -0.09
LINC00539-201ENST00000411525 PIGBQ92521 554 aa14.51□□□□□ -0.09
LINC00539-201ENST00000411525 LGR6Q9HBX8 967 aa14.51□□□□□ -0.09
LINC00539-201ENST00000411525 TEFQ10587 303 aa14.5□□□□□ -0.09
LINC00539-201ENST00000411525 TAF7Q15545 349 aaPredicted RBP14.5□□□□□ -0.09
LINC00539-201ENST00000411525 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.5□□□□□ -0.09
LINC00539-201ENST00000411525 ZNF428Q96B54 188 aa14.5□□□□□ -0.09
LINC00539-201ENST00000411525 TMOD3Q9NYL9 352 aa14.5□□□□□ -0.09
LINC00539-201ENST00000411525 LOC102724428A0A0B4J2F2 783 aa14.49□□□□□ -0.09
LINC00539-201ENST00000411525 SSFA2P28290 1259 aa14.49□□□□□ -0.09
LINC00539-201ENST00000411525 SIK1P57059 783 aa14.49□□□□□ -0.09
LINC00539-201ENST00000411525 BCAR3O75815 825 aa14.48□□□□□ -0.09
LINC00539-201ENST00000411525 YBX3P16989 372 aaKnown RBP eCLIP14.48□□□□□ -0.09
LINC00539-201ENST00000411525 TWISTNBQ3B726 338 aaPredicted RBP14.48□□□□□ -0.09
LINC00539-201ENST00000411525 C8orf58Q8NAV2 365 aa14.48□□□□□ -0.09
LINC00539-201ENST00000411525 DCAF5Q96JK2 942 aa14.48□□□□□ -0.09
LINC00539-201ENST00000411525 MIS18AQ9NYP9 233 aa14.48□□□□□ -0.09
LINC00539-201ENST00000411525 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.47□□□□□ -0.09
LINC00539-201ENST00000411525 ALDH1L2Q3SY69 923 aa14.47□□□□□ -0.09
LINC00539-201ENST00000411525 ERICH6BQ5W0A0 696 aa14.47□□□□□ -0.09
LINC00539-201ENST00000411525 TSPYL6Q8N831 410 aa14.47□□□□□ -0.09
LINC00539-201ENST00000411525 SMC4Q9NTJ3 1288 aa14.47□□□□□ -0.09
LINC00539-201ENST00000411525 PLIN1O60240 522 aa14.46□□□□□ -0.09
LINC00539-201ENST00000411525 VAMP4O75379 141 aa14.46□□□□□ -0.09
LINC00539-201ENST00000411525 PHF14O94880 888 aa14.46□□□□□ -0.09
LINC00539-201ENST00000411525 SSH1Q8WYL5 1049 aa14.46□□□□□ -0.09
LINC00539-201ENST00000411525 BCL2L13Q9BXK5 485 aa14.46□□□□□ -0.09
LINC00539-201ENST00000411525 SOS1Q07889 1333 aaPredicted RBP14.45□□□□□ -0.1
LINC00539-201ENST00000411525 BTBD11A6QL63 1104 aa14.45□□□□□ -0.1
LINC00539-201ENST00000411525 CANXP27824 592 aaKnown RBP14.45□□□□□ -0.1
LINC00539-201ENST00000411525 ATP6V1AP38606 617 aa14.45□□□□□ -0.1
LINC00539-201ENST00000411525 KRT24Q2M2I5 525 aa14.45□□□□□ -0.1
LINC00539-201ENST00000411525 SLC52A2Q9HAB3 445 aa14.45□□□□□ -0.1
LINC00539-201ENST00000411525 ZNF831Q5JPB2 1677 aa14.45□□□□□ -0.1
LINC00539-201ENST00000411525 KIF16BQ96L93 1317 aa14.44□□□□□ -0.1
LINC00539-201ENST00000411525 ELL2O00472 640 aaPredicted RBP14.44□□□□□ -0.1
LINC00539-201ENST00000411525 LINC00116Q8NCU8 138 aa14.44□□□□□ -0.1
LINC00539-201ENST00000411525 ASAP1Q9ULH1 1129 aa14.44□□□□□ -0.1
LINC00539-201ENST00000411525 CEP350Q5VT06 3117 aa14.43□□□□□ -0.1
LINC00539-201ENST00000411525 ERVV-2B6SEH9 535 aa14.43□□□□□ -0.1
LINC00539-201ENST00000411525 GNPATO15228 680 aa14.43□□□□□ -0.1
LINC00539-201ENST00000411525 BRPF1P55201 1214 aaPredicted RBP14.42□□□□□ -0.1
LINC00539-201ENST00000411525 EIF4A1P60842 406 aaKnown RBP14.42□□□□□ -0.1
LINC00539-201ENST00000411525 AMIGO3Q86WK7 504 aa14.42□□□□□ -0.1
LINC00539-201ENST00000411525 FRAT1Q92837 279 aaPredicted RBP14.42□□□□□ -0.1
LINC00539-201ENST00000411525 ATG3Q9NT62 314 aa14.42□□□□□ -0.1
LINC00539-201ENST00000411525 UBR2Q8IWV8 1755 aa14.42□□□□□ -0.1
LINC00539-201ENST00000411525 CABP4P57796 275 aa14.41□□□□□ -0.1
LINC00539-201ENST00000411525 ITPK1Q13572 414 aa14.41□□□□□ -0.1
LINC00539-201ENST00000411525 TRAPPC3LQ5T215 181 aa14.41□□□□□ -0.1
LINC00539-201ENST00000411525 C20orf194Q5TEA3 1177 aa14.41□□□□□ -0.1
LINC00539-201ENST00000411525 MRPL50Q8N5N7 158 aaKnown RBP14.41□□□□□ -0.1
LINC00539-201ENST00000411525 GPBP1L1Q9HC44 474 aaPredicted RBP14.41□□□□□ -0.1
LINC00539-201ENST00000411525 RTCBQ9Y3I0 505 aaKnown RBP14.41□□□□□ -0.1
LINC00539-201ENST00000411525 ATP10DQ9P241 1426 aa14.41□□□□□ -0.1
LINC00539-201ENST00000411525 LAMB4A4D0S4 1761 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 KCNQ3O43525 872 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 HOXB7P09629 217 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 ADRA2BP18089 450 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 PDE3AQ14432 1141 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 ZKSCAN2Q63HK3 967 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 NLGN1Q8N2Q7 840 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 NFATC2IPQ8NCF5 419 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 CRBNQ96SW2 442 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 KIF13BQ9NQT8 1826 aa14.4□□□□□ -0.1
LINC00539-201ENST00000411525 HEG1Q9ULI3 1381 aa14.39□□□□□ -0.11
LINC00539-201ENST00000411525 RC3H1Q5TC82 1133 aaKnown RBP14.39□□□□□ -0.11
LINC00539-201ENST00000411525 COL5A3P25940 1745 aaPredicted RBP14.38□□□□□ -0.11
LINC00539-201ENST00000411525 TCERG1O14776 1098 aaKnown RBP14.38□□□□□ -0.11
LINC00539-201ENST00000411525 IPO8O15397 1037 aaKnown RBP14.38□□□□□ -0.11
LINC00539-201ENST00000411525 MMP10P09238 476 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 MS4A1P11836 297 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 ZNF790Q6PG37 636 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 ATF7IPQ6VMQ6 1270 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 SMIM5Q71RC9 77 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 EXOC6Q8TAG9 804 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 RBM42Q9BTD8 480 aaKnown RBP14.38□□□□□ -0.11
LINC00539-201ENST00000411525 NOB1Q9ULX3 412 aaKnown RBP14.38□□□□□ -0.11
LINC00539-201ENST00000411525 CACNA1FO60840 1977 aa14.38□□□□□ -0.11
LINC00539-201ENST00000411525 ADCY9O60503 1353 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 KCPQ6ZWJ8 1503 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 TRIM27P14373 513 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 TGFB2P61812 414 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 CCDC30Q5VVM6 783 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 TTC5Q8N0Z6 440 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 PPP4R2Q9NY27 417 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 CNTNAP4Q9C0A0 1308 aa14.37□□□□□ -0.11
LINC00539-201ENST00000411525 MYH14Q7Z406 1995 aaKnown RBP14.36□□□□□ -0.11
LINC00539-201ENST00000411525 SLC39A6Q13433 755 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms