RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 ARAFP10398 606 aa9.12□□□□□ -0.95
CLK1-203ENST00000409769 SKIP12755 728 aa9.12□□□□□ -0.95
CLK1-203ENST00000409769 FLIIQ13045 1269 aa9.12□□□□□ -0.95
CLK1-203ENST00000409769 FAM182BQ5T319 152 aa9.12□□□□□ -0.95
CLK1-203ENST00000409769 ZCCHC2Q9C0B9 1178 aaKnown RBP9.12□□□□□ -0.95
CLK1-203ENST00000409769 DNAAF2Q9NVR5 837 aaKnown RBP9.12□□□□□ -0.95
CLK1-203ENST00000409769 PCDHGA11Q9Y5H2 935 aa9.12□□□□□ -0.95
CLK1-203ENST00000409769 AVENQ9NQS1 362 aaPredicted RBP9.11□□□□□ -0.95
CLK1-203ENST00000409769 SERTAD1Q9UHV2 236 aa9.11□□□□□ -0.95
CLK1-203ENST00000409769 IQSEC3Q9UPP2 1182 aaPredicted RBP9.11□□□□□ -0.95
CLK1-203ENST00000409769 LOC100996750A0A140TA64 210 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 SHISA8B8ZZ34 492 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 MSTNO14793 375 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 ATXN7O15265 892 aaPredicted RBP9.1□□□□□ -0.95
CLK1-203ENST00000409769 PLA2G4EQ3MJ16 856 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 ARSJQ5FYB0 599 aaPredicted RBP9.1□□□□□ -0.95
CLK1-203ENST00000409769 ZNF295-AS1Q8N0V1 137 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 KRTAP4-6Q9BYQ5 205 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 CABP1Q9NZU7 370 aa9.1□□□□□ -0.95
CLK1-203ENST00000409769 A0A1W2PNR3 127 aa9.09□□□□□ -0.95
CLK1-203ENST00000409769 PIK3CDO00329 1044 aa9.09□□□□□ -0.95
CLK1-203ENST00000409769 C2CD2LO14523 706 aa9.09□□□□□ -0.95
CLK1-203ENST00000409769 GTF2IP78347 998 aa9.09□□□□□ -0.95
CLK1-203ENST00000409769 CTBSQ01459 385 aa9.09□□□□□ -0.95
CLK1-203ENST00000409769 GGA1Q9UJY5 639 aa9.09□□□□□ -0.95
CLK1-203ENST00000409769 FAM157BP0CG42 384 aa9.08□□□□□ -0.96
CLK1-203ENST00000409769 AMPD1P23109 780 aa9.08□□□□□ -0.96
CLK1-203ENST00000409769 SAMD5Q5TGI4 173 aa9.08□□□□□ -0.96
CLK1-203ENST00000409769 C1orf229Q6ZS94 237 aaPredicted RBP9.08□□□□□ -0.96
CLK1-203ENST00000409769 TRIM50Q86XT4 487 aa9.08□□□□□ -0.96
CLK1-203ENST00000409769 RRAGCQ9HB90 399 aa9.08□□□□□ -0.96
CLK1-203ENST00000409769 GJA3Q9Y6H8 435 aa9.08□□□□□ -0.96
CLK1-203ENST00000409769 EPXP11678 715 aa9.07□□□□□ -0.96
CLK1-203ENST00000409769 SNRPNP63162 240 aaKnown RBP9.07□□□□□ -0.96
CLK1-203ENST00000409769 PSME1Q06323 249 aa9.07□□□□□ -0.96
CLK1-203ENST00000409769 LAMC2Q13753 1193 aa9.07□□□□□ -0.96
CLK1-203ENST00000409769 NCOA4Q13772 614 aa9.07□□□□□ -0.96
CLK1-203ENST00000409769 SCHIP1Q9P0W5 487 aaPredicted RBP9.07□□□□□ -0.96
CLK1-203ENST00000409769 GPC6Q9Y625 555 aaPredicted RBP9.07□□□□□ -0.96
CLK1-203ENST00000409769 USP17L5A8MUK1 530 aa9.06□□□□□ -0.96
CLK1-203ENST00000409769 MAPTP10636 758 aaKnown RBP9.06□□□□□ -0.96
CLK1-203ENST00000409769 ADH6P28332 368 aa9.06□□□□□ -0.96
CLK1-203ENST00000409769 ATP1A2P50993 1020 aa9.06□□□□□ -0.96
CLK1-203ENST00000409769 TNP2Q05952 138 aa9.06□□□□□ -0.96
CLK1-203ENST00000409769 ZIC5Q96T25 663 aa9.06□□□□□ -0.96
CLK1-203ENST00000409769 UBTFP17480 764 aaKnown RBP9.05□□□□□ -0.96
CLK1-203ENST00000409769 TEAD4Q15561 434 aa9.05□□□□□ -0.96
CLK1-203ENST00000409769 BICDL1Q6ZP65 573 aa9.05□□□□□ -0.96
CLK1-203ENST00000409769 SPOCK3Q9BQ16 436 aa9.05□□□□□ -0.96
CLK1-203ENST00000409769 ZNF358Q9NW07 568 aa9.05□□□□□ -0.96
CLK1-203ENST00000409769 GNB5O14775 395 aa9.04□□□□□ -0.96
CLK1-203ENST00000409769 KHNYNO15037 678 aaKnown RBP9.04□□□□□ -0.96
CLK1-203ENST00000409769 PLEKHM2Q8IWE5 1019 aa9.04□□□□□ -0.96
CLK1-203ENST00000409769 BTBD6Q96KE9 485 aa9.04□□□□□ -0.96
CLK1-203ENST00000409769 NOP53Q9NZM5 478 aaKnown RBP9.04□□□□□ -0.96
CLK1-203ENST00000409769 DCDC2BA2VCK2 349 aa9.03□□□□□ -0.96
CLK1-203ENST00000409769 NEURL1BA8MQ27 555 aa9.03□□□□□ -0.96
CLK1-203ENST00000409769 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.03□□□□□ -0.96
CLK1-203ENST00000409769 GTF3C3Q9Y5Q9 886 aa9.03□□□□□ -0.96
CLK1-203ENST00000409769 USP3Q9Y6I4 520 aa9.03□□□□□ -0.96
CLK1-203ENST00000409769 LINC00114Q6XXX2 140 aa9.02□□□□□ -0.97
CLK1-203ENST00000409769 POM121Q96HA1 1249 aa9.02□□□□□ -0.97
CLK1-203ENST00000409769 MARK1Q9P0L2 795 aa9.02□□□□□ -0.97
CLK1-203ENST00000409769 CHMP3Q9Y3E7 222 aa9.02□□□□□ -0.97
CLK1-203ENST00000409769 HOXB4P17483 251 aaPredicted RBP9.01□□□□□ -0.97
CLK1-203ENST00000409769 NOS2P35228 1153 aa9.01□□□□□ -0.97
CLK1-203ENST00000409769 DGKGP49619 791 aa9.01□□□□□ -0.97
CLK1-203ENST00000409769 EPHA4P54764 986 aa9.01□□□□□ -0.97
CLK1-203ENST00000409769 ZNF468Q5VIY5 522 aaPredicted RBP9.01□□□□□ -0.97
CLK1-203ENST00000409769 L3MBTL2Q969R5 705 aa9.01□□□□□ -0.97
CLK1-203ENST00000409769 PRR12Q9ULL5 1215 aa9.01□□□□□ -0.97
CLK1-203ENST00000409769 M0R2N6 131 aa9□□□□□ -0.97
CLK1-203ENST00000409769 EML1O00423 815 aa9□□□□□ -0.97
CLK1-203ENST00000409769 EFSO43281 561 aa9□□□□□ -0.97
CLK1-203ENST00000409769 PROCP04070 461 aa9□□□□□ -0.97
CLK1-203ENST00000409769 ITGB2P05107 769 aa9□□□□□ -0.97
CLK1-203ENST00000409769 CD33P20138 364 aa9□□□□□ -0.97
CLK1-203ENST00000409769 SLC9A9Q8IVB4 645 aa9□□□□□ -0.97
CLK1-203ENST00000409769 NEUROD4Q9HD90 331 aa9□□□□□ -0.97
CLK1-203ENST00000409769 SERTM1A2A2V5 107 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 USP17L3A6NCW0 530 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 USP17L4A6NCW7 530 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 USP17L2Q6R6M4 530 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 CHSY3Q70JA7 882 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 USP17L1Q7RTZ2 530 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 DEPDC4Q8N2C3 294 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 ZDHHC1Q8WTX9 485 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 ZNF232Q9UNY5 417 aa8.99□□□□□ -0.97
CLK1-203ENST00000409769 KRBA1A5PL33 1030 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 ATP9BO43861 1147 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 COL8A1P27658 744 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 TXLNAP40222 546 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 PSMA6P60900 246 aaKnown RBP8.98□□□□□ -0.97
CLK1-203ENST00000409769 GRIN2CQ14957 1233 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 CCDC102BQ68D86 513 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 LARGE2Q8N3Y3 721 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 TPCN2Q8NHX9 752 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 RBM19Q9Y4C8 960 aaKnown RBP8.98□□□□□ -0.97
CLK1-203ENST00000409769 PARP3Q9Y6F1 533 aa8.98□□□□□ -0.97
CLK1-203ENST00000409769 HIRAP54198 1017 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms