RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 RIMS1Q86UR5 1692 aaKnown RBP13.84□□□□□ -0.19
SNX13-202ENST00000409604 TTLL7Q6ZT98 887 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 GCC1Q96CN9 775 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 RAI14Q9P0K7 980 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 USP19O94966 1318 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 CAMSAP1Q5T5Y3 1602 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 PPFIA3O75145 1194 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 KSR2Q6VAB6 950 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 SETDB2Q96T68 719 aa13.84□□□□□ -0.19
SNX13-202ENST00000409604 RTCBQ9Y3I0 505 aaKnown RBP13.84□□□□□ -0.19
SNX13-202ENST00000409604 ZKSCAN1P17029 563 aaPredicted RBP13.83□□□□□ -0.19
SNX13-202ENST00000409604 CERKQ8TCT0 537 aa13.83□□□□□ -0.19
SNX13-202ENST00000409604 FRMPD1Q5SYB0 1578 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 REC8O95072 547 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 NBPF7P0C2Y1 421 aaPredicted RBP13.83□□□□□ -0.2
SNX13-202ENST00000409604 INTS3Q68E01 1043 aaKnown RBP13.83□□□□□ -0.2
SNX13-202ENST00000409604 RUFY2Q8WXA3 655 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 ANP32BQ92688 251 aaKnown RBP13.83□□□□□ -0.2
SNX13-202ENST00000409604 LRP2BPQ9P2M1 347 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 KCNQ2O43526 872 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 ATP2B2Q01814 1243 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 CNTROBQ8N137 903 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 ZNF594Q96JF6 807 aaPredicted RBP13.83□□□□□ -0.2
SNX13-202ENST00000409604 INSRP06213 1382 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 PIK3C2BO00750 1634 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 PLEKHF1Q96S99 279 aa13.83□□□□□ -0.2
SNX13-202ENST00000409604 BCORL1Q5H9F3 1711 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 GRM8O00222 908 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 EIF4A1P60842 406 aaKnown RBP13.82□□□□□ -0.2
SNX13-202ENST00000409604 MCTP1Q6DN14 999 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 FAM135BQ49AJ0 1406 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 PIK3R4Q99570 1358 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 CYP27B1O15528 508 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 CDC45O75419 566 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 RPGRQ92834 1020 aaKnown RBP13.82□□□□□ -0.2
SNX13-202ENST00000409604 ST18O60284 1047 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 IPO9Q96P70 1041 aaKnown RBP13.82□□□□□ -0.2
SNX13-202ENST00000409604 NDUFB9Q9Y6M9 179 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 IL16Q14005 1332 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 ARHGEF40Q8TER5 1519 aa13.82□□□□□ -0.2
SNX13-202ENST00000409604 GLI2P10070 1586 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 ADGRB3O60242 1522 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 NEK4P51957 841 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 TRIM34Q9BYJ4 488 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 HSP90AB3PQ58FF7 597 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 NFXL1Q6ZNB6 911 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 TEX13AQ9BXU3 409 aaPredicted RBP13.81□□□□□ -0.2
SNX13-202ENST00000409604 DDX21Q9NR30 783 aaKnown RBP eCLIP13.81□□□□□ -0.2
SNX13-202ENST00000409604 MADDQ8WXG6 1647 aa13.81□□□□□ -0.2
SNX13-202ENST00000409604 F8W031 263 aaPredicted RBP13.8□□□□□ -0.2
SNX13-202ENST00000409604 STK3Q13188 491 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 VPS53Q5VIR6 699 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 SEPT12Q8IYM1 358 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 WDR17Q8IZU2 1322 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 ZRSR1Q15695 479 aaKnown RBP13.8□□□□□ -0.2
SNX13-202ENST00000409604 UPF3BQ9BZI7 483 aaKnown RBP13.8□□□□□ -0.2
SNX13-202ENST00000409604 NPC1L1Q9UHC9 1359 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 KDM5AP29375 1690 aaKnown RBP13.8□□□□□ -0.2
SNX13-202ENST00000409604 ANKRD18BA2A2Z9 1011 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 MX1P20591 662 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 DDX46Q7L014 1031 aaKnown RBP13.8□□□□□ -0.2
SNX13-202ENST00000409604 AFF2P51816 1311 aa13.8□□□□□ -0.2
SNX13-202ENST00000409604 PIBF1Q8WXW3 757 aa13.79□□□□□ -0.2
SNX13-202ENST00000409604 KIF1BPQ96EK5 621 aa13.79□□□□□ -0.2
SNX13-202ENST00000409604 PTPRCP08575 1304 aa13.79□□□□□ -0.2
SNX13-202ENST00000409604 GIGYF1O75420 1035 aaPredicted RBP13.79□□□□□ -0.2
SNX13-202ENST00000409604 TRDNQ13061 729 aa13.79□□□□□ -0.2
SNX13-202ENST00000409604 NSFL1CQ9UNZ2 370 aaKnown RBP13.79□□□□□ -0.2
SNX13-202ENST00000409604 GOLIM4O00461 696 aa13.79□□□□□ -0.2
SNX13-202ENST00000409604 ZSCAN29Q8IWY8 852 aaPredicted RBP13.79□□□□□ -0.2
SNX13-202ENST00000409604 OTUD7AQ8TE49 926 aaPredicted RBP13.79□□□□□ -0.2
SNX13-202ENST00000409604 HTATSF1O43719 755 aaKnown RBP13.79□□□□□ -0.2
SNX13-202ENST00000409604 SMARCC1Q92922 1105 aaPredicted RBP13.79□□□□□ -0.2
SNX13-202ENST00000409604 CARD10Q9BWT7 1032 aa13.79□□□□□ -0.2
SNX13-202ENST00000409604 IFIT1P09914 478 aaKnown RBP13.78□□□□□ -0.2
SNX13-202ENST00000409604 ERC1Q8IUD2 1116 aa13.78□□□□□ -0.2
SNX13-202ENST00000409604 IGSF1Q8N6C5 1336 aa13.78□□□□□ -0.2
SNX13-202ENST00000409604 IRS4O14654 1257 aaPredicted RBP13.78□□□□□ -0.2
SNX13-202ENST00000409604 TIMM10P62072 90 aa13.78□□□□□ -0.2
SNX13-202ENST00000409604 BICC1Q9H694 974 aaKnown RBP13.78□□□□□ -0.2
SNX13-202ENST00000409604 RALYLQ86SE5 291 aaKnown RBP13.78□□□□□ -0.2
SNX13-202ENST00000409604 LINS1Q8NG48 757 aa13.78□□□□□ -0.2
SNX13-202ENST00000409604 ZBTB1Q9Y2K1 713 aa13.78□□□□□ -0.2
SNX13-202ENST00000409604 EIF5BO60841 1220 aaKnown RBP13.77□□□□□ -0.2
SNX13-202ENST00000409604 ATP2B1P20020 1258 aa13.77□□□□□ -0.2
SNX13-202ENST00000409604 TRAPPC3LQ5T215 181 aa13.77□□□□□ -0.2
SNX13-202ENST00000409604 PIGBQ92521 554 aa13.77□□□□□ -0.2
SNX13-202ENST00000409604 TRPC5Q9UL62 973 aaPredicted RBP13.77□□□□□ -0.2
SNX13-202ENST00000409604 RIMBP2O15034 1052 aa13.77□□□□□ -0.21
SNX13-202ENST00000409604 VPS37CA5D8V6 355 aaPredicted RBP13.77□□□□□ -0.21
SNX13-202ENST00000409604 C1orf167Q5SNV9 1468 aa13.77□□□□□ -0.21
SNX13-202ENST00000409604 SYNMO15061 1565 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 DTNBO60941 627 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 FAM184AQ8NB25 1140 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 CPLX1O14810 134 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 NLRP3Q96P20 1036 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 LOC102724428A0A0B4J2F2 783 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 SIK1P57059 783 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 UNC5CLQ8IV45 518 aa13.76□□□□□ -0.21
SNX13-202ENST00000409604 NEXMIFQ5QGS0 1516 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms