RNA–Protein interactions for RNA: ENST00000405578.8

RPAIN-204, Transcript of RPA interacting protein, humanhuman

TSL 2 BASIC

Gene RPAIN, Length 1,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-204ENST00000405578 DCAF5Q96JK2 942 aa13.95□□□□□ -0.18
RPAIN-204ENST00000405578 RTCBQ9Y3I0 505 aaKnown RBP13.95□□□□□ -0.18
RPAIN-204ENST00000405578 MAPK8IP3Q9UPT6 1336 aa13.94□□□□□ -0.18
RPAIN-204ENST00000405578 SLC34A2O95436 690 aa13.94□□□□□ -0.18
RPAIN-204ENST00000405578 C1orf141Q5JVX7 400 aa13.94□□□□□ -0.18
RPAIN-204ENST00000405578 TRAPPC3LQ5T215 181 aa13.94□□□□□ -0.18
RPAIN-204ENST00000405578 RSPH6AQ9H0K4 717 aa13.94□□□□□ -0.18
RPAIN-204ENST00000405578 PARP3Q9Y6F1 533 aa13.94□□□□□ -0.18
RPAIN-204ENST00000405578 HSP90AB1P08238 724 aaKnown RBP13.93□□□□□ -0.18
RPAIN-204ENST00000405578 GYS1P13807 737 aa13.93□□□□□ -0.18
RPAIN-204ENST00000405578 IFNL2Q8IZJ0 200 aa13.93□□□□□ -0.18
RPAIN-204ENST00000405578 GAS2L2Q8NHY3 880 aa13.93□□□□□ -0.18
RPAIN-204ENST00000405578 PIM2Q9P1W9 311 aa13.93□□□□□ -0.18
RPAIN-204ENST00000405578 DLEC1Q9Y238 1755 aa13.92□□□□□ -0.18
RPAIN-204ENST00000405578 DALRD3Q5D0E6 543 aaKnown RBP13.92□□□□□ -0.18
RPAIN-204ENST00000405578 ZNF530Q6P9A1 599 aaPredicted RBP13.92□□□□□ -0.18
RPAIN-204ENST00000405578 MIER1Q8N108 512 aa13.92□□□□□ -0.18
RPAIN-204ENST00000405578 PNISRQ8TF01 805 aaKnown RBP13.92□□□□□ -0.18
RPAIN-204ENST00000405578 ARHGEF1Q92888 912 aaKnown RBP13.92□□□□□ -0.18
RPAIN-204ENST00000405578 ATG3Q9NT62 314 aa13.92□□□□□ -0.18
RPAIN-204ENST00000405578 CCDC184Q52MB2 194 aa13.91□□□□□ -0.18
RPAIN-204ENST00000405578 ADAMTS8Q9UP79 889 aa13.91□□□□□ -0.18
RPAIN-204ENST00000405578 AFDNP55196 1824 aaKnown RBP13.91□□□□□ -0.18
RPAIN-204ENST00000405578 RFC4P35249 363 aa13.9□□□□□ -0.18
RPAIN-204ENST00000405578 RASSF7Q02833 373 aa13.9□□□□□ -0.18
RPAIN-204ENST00000405578 RUNDC1Q96C34 613 aa13.9□□□□□ -0.18
RPAIN-204ENST00000405578 PHKG2P15735 406 aa13.89□□□□□ -0.19
RPAIN-204ENST00000405578 CHRNA5P30532 468 aa13.89□□□□□ -0.19
RPAIN-204ENST00000405578 MTHFSDQ2M296 383 aaKnown RBP13.89□□□□□ -0.19
RPAIN-204ENST00000405578 AKAP4Q5JQC9 854 aa13.89□□□□□ -0.19
RPAIN-204ENST00000405578 FAM9BQ8IZU0 186 aa13.89□□□□□ -0.19
RPAIN-204ENST00000405578 SLC4A9Q96Q91 983 aa13.89□□□□□ -0.19
RPAIN-204ENST00000405578 KDM6AO15550 1401 aaPredicted RBP13.89□□□□□ -0.19
RPAIN-204ENST00000405578 CNTNAP4Q9C0A0 1308 aa13.89□□□□□ -0.19
RPAIN-204ENST00000405578 ZC3H4Q9UPT8 1303 aaKnown RBP13.89□□□□□ -0.19
RPAIN-204ENST00000405578 DICER1Q9UPY3 1922 aaKnown RBP13.88□□□□□ -0.19
RPAIN-204ENST00000405578 TJP1Q07157 1748 aa13.88□□□□□ -0.19
RPAIN-204ENST00000405578 RTF1Q92541 710 aaKnown RBP13.88□□□□□ -0.19
RPAIN-204ENST00000405578 PHACTR3Q96KR7 559 aa13.88□□□□□ -0.19
RPAIN-204ENST00000405578 RBM42Q9BTD8 480 aaKnown RBP13.88□□□□□ -0.19
RPAIN-204ENST00000405578 GNAT3A8MTJ3 354 aa13.87□□□□□ -0.19
RPAIN-204ENST00000405578 RPS6KA4O75676 772 aa13.87□□□□□ -0.19
RPAIN-204ENST00000405578 VEGFAP15692 232 aaPredicted RBP13.87□□□□□ -0.19
RPAIN-204ENST00000405578 DDR1Q08345 913 aa13.87□□□□□ -0.19
RPAIN-204ENST00000405578 RC3H1Q5TC82 1133 aaKnown RBP13.87□□□□□ -0.19
RPAIN-204ENST00000405578 PLEKHF1Q96S99 279 aa13.87□□□□□ -0.19
RPAIN-204ENST00000405578 ADAMTS7Q9UKP4 1686 aa13.87□□□□□ -0.19
RPAIN-204ENST00000405578 LMOD3Q0VAK6 560 aa13.86□□□□□ -0.19
RPAIN-204ENST00000405578 NFE2L2Q16236 605 aa13.86□□□□□ -0.19
RPAIN-204ENST00000405578 CCDC146Q8IYE0 955 aa13.86□□□□□ -0.19
RPAIN-204ENST00000405578 SRP68Q9UHB9 627 aaKnown RBP13.86□□□□□ -0.19
RPAIN-204ENST00000405578 GLTPD2A6NH11 291 aa13.85□□□□□ -0.19
RPAIN-204ENST00000405578 HTATSF1O43719 755 aaKnown RBP13.85□□□□□ -0.19
RPAIN-204ENST00000405578 FKBP8Q14318 412 aa13.85□□□□□ -0.19
RPAIN-204ENST00000405578 NRXN2Q9P2S2 1712 aa13.84□□□□□ -0.19
RPAIN-204ENST00000405578 LMNB1P20700 586 aa13.84□□□□□ -0.19
RPAIN-204ENST00000405578 MKRN1Q9UHC7 482 aaKnown RBP13.84□□□□□ -0.19
RPAIN-204ENST00000405578 VIRMAQ69YN4 1812 aaKnown RBP13.84□□□□□ -0.19
RPAIN-204ENST00000405578 USP42Q9H9J4 1324 aaKnown RBP13.84□□□□□ -0.19
RPAIN-204ENST00000405578 ERVV-2B6SEH9 535 aa13.83□□□□□ -0.2
RPAIN-204ENST00000405578 FOXN1O15353 648 aa13.83□□□□□ -0.2
RPAIN-204ENST00000405578 RIPK4P57078 832 aa13.83□□□□□ -0.2
RPAIN-204ENST00000405578 CABP4P57796 275 aa13.83□□□□□ -0.2
RPAIN-204ENST00000405578 CACNA1SQ13698 1873 aa13.82□□□□□ -0.2
RPAIN-204ENST00000405578 TMPOP42166 694 aaKnown RBP13.82□□□□□ -0.2
RPAIN-204ENST00000405578 TEFQ10587 303 aa13.82□□□□□ -0.2
RPAIN-204ENST00000405578 FER1L6Q2WGJ9 1857 aa13.81□□□□□ -0.2
RPAIN-204ENST00000405578 POLRMTO00411 1230 aaKnown RBP13.81□□□□□ -0.2
RPAIN-204ENST00000405578 APAF1O14727 1248 aa13.81□□□□□ -0.2
RPAIN-204ENST00000405578 NEUROD2Q15784 382 aa13.81□□□□□ -0.2
RPAIN-204ENST00000405578 NGEFQ8N5V2 710 aa13.81□□□□□ -0.2
RPAIN-204ENST00000405578 POTECB2RU33 542 aa13.8□□□□□ -0.2
RPAIN-204ENST00000405578 RNMTO43148 476 aaKnown RBP13.8□□□□□ -0.2
RPAIN-204ENST00000405578 CRKLP46109 303 aaKnown RBP13.8□□□□□ -0.2
RPAIN-204ENST00000405578 POTEDQ86YR6 584 aa13.8□□□□□ -0.2
RPAIN-204ENST00000405578 PRDM10Q9NQV6 1147 aa13.8□□□□□ -0.2
RPAIN-204ENST00000405578 CREBZFQ9NS37 354 aa13.8□□□□□ -0.2
RPAIN-204ENST00000405578 RRP7AQ9Y3A4 280 aaKnown RBP13.8□□□□□ -0.2
RPAIN-204ENST00000405578 ANKRD31Q8N7Z5 1873 aa13.79□□□□□ -0.2
RPAIN-204ENST00000405578 CALD1Q05682 793 aaKnown RBP13.79□□□□□ -0.2
RPAIN-204ENST00000405578 FAM161AQ3B820 660 aa13.79□□□□□ -0.2
RPAIN-204ENST00000405578 COL11A2P13942 1736 aaPredicted RBP13.78□□□□□ -0.2
RPAIN-204ENST00000405578 SCN11AQ9UI33 1791 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 PTCD1O75127 700 aaKnown RBP13.78□□□□□ -0.2
RPAIN-204ENST00000405578 TM4SF1P30408 202 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 NCBP3Q53F19 620 aaKnown RBP13.78□□□□□ -0.2
RPAIN-204ENST00000405578 MCM10Q7L590 875 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 NFATC2IPQ8NCF5 419 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 IL17REQ8NFR9 667 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 SLC52A2Q9HAB3 445 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 LGR6Q9HBX8 967 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 CNTNAP1P78357 1384 aa13.78□□□□□ -0.2
RPAIN-204ENST00000405578 NFKBIEO00221 500 aa13.77□□□□□ -0.21
RPAIN-204ENST00000405578 CTCFP49711 727 aaPredicted RBP13.77□□□□□ -0.21
RPAIN-204ENST00000405578 CHADLQ6NUI6 762 aa13.77□□□□□ -0.21
RPAIN-204ENST00000405578 AIDAQ96BJ3 306 aa13.77□□□□□ -0.21
RPAIN-204ENST00000405578 USPL1Q5W0Q7 1092 aa13.76□□□□□ -0.21
RPAIN-204ENST00000405578 TTLL6Q8N841 843 aa13.76□□□□□ -0.21
RPAIN-204ENST00000405578 SCN4AP35499 1836 aa13.76□□□□□ -0.21
RPAIN-204ENST00000405578 CARMIL3Q8ND23 1372 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms