RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ITPK1Q13572 414 aa23.11■■□□□ 1.29
SDC1-203ENST00000403076 A1BGP04217 495 aa23.1■■□□□ 1.29
SDC1-203ENST00000403076 PLSCR1O15162 318 aa23.09■■□□□ 1.29
SDC1-203ENST00000403076 ANXA1P04083 346 aa23.09■■□□□ 1.29
SDC1-203ENST00000403076 CYP19A1P11511 503 aaPredicted RBP23.09■■□□□ 1.29
SDC1-203ENST00000403076 MYL6BP14649 208 aa23.09■■□□□ 1.29
SDC1-203ENST00000403076 PIP4K2AP48426 406 aaPredicted RBP23.09■■□□□ 1.29
SDC1-203ENST00000403076 DDX21Q9NR30 783 aaKnown RBP eCLIP23.09■■□□□ 1.29
SDC1-203ENST00000403076 KIF16BQ96L93 1317 aa23.09■■□□□ 1.29
SDC1-203ENST00000403076 HYPKQ9NX55 129 aa23.08■■□□□ 1.29
SDC1-203ENST00000403076 NOB1Q9ULX3 412 aaKnown RBP23.08■■□□□ 1.29
SDC1-203ENST00000403076 ERBB4Q15303 1308 aa23.08■■□□□ 1.29
SDC1-203ENST00000403076 IPO8O15397 1037 aaKnown RBP23.08■■□□□ 1.28
SDC1-203ENST00000403076 PLIN1O60240 522 aa23.08■■□□□ 1.28
SDC1-203ENST00000403076 BRPF1P55201 1214 aaPredicted RBP23.08■■□□□ 1.28
SDC1-203ENST00000403076 RRP1P56182 461 aaKnown RBP23.08■■□□□ 1.28
SDC1-203ENST00000403076 LAMB4A4D0S4 1761 aa23.07■■□□□ 1.28
SDC1-203ENST00000403076 TXNRD1Q16881 649 aa23.07■■□□□ 1.28
SDC1-203ENST00000403076 PROSER3Q2NL68 480 aa23.07■■□□□ 1.28
SDC1-203ENST00000403076 SLC27A3Q5K4L6 730 aa23.07■■□□□ 1.28
SDC1-203ENST00000403076 CRKLP46109 303 aaKnown RBP23.06■■□□□ 1.28
SDC1-203ENST00000403076 PDIA6Q15084 440 aa23.06■■□□□ 1.28
SDC1-203ENST00000403076 G2E3Q7L622 706 aa23.06■■□□□ 1.28
SDC1-203ENST00000403076 LINC00116Q8NCU8 138 aa23.06■■□□□ 1.28
SDC1-203ENST00000403076 CCDC87Q9NVE4 849 aa23.06■■□□□ 1.28
SDC1-203ENST00000403076 ZNF330Q9Y3S2 320 aaPredicted RBP23.06■■□□□ 1.28
SDC1-203ENST00000403076 TJP1Q07157 1748 aa23.06■■□□□ 1.28
SDC1-203ENST00000403076 SOCS7O14512 581 aa23.05■■□□□ 1.28
SDC1-203ENST00000403076 ZKSCAN2Q63HK3 967 aa23.05■■□□□ 1.28
SDC1-203ENST00000403076 NPM2Q86SE8 214 aaKnown RBP23.05■■□□□ 1.28
SDC1-203ENST00000403076 PHAXQ9H814 394 aaKnown RBP23.05■■□□□ 1.28
SDC1-203ENST00000403076 LY75O60449 1722 aa23.05■■□□□ 1.28
SDC1-203ENST00000403076 NBPF26B4DH59 902 aa23.04■■□□□ 1.28
SDC1-203ENST00000403076 HMGB2P26583 209 aaKnown RBP23.04■■□□□ 1.28
SDC1-203ENST00000403076 BAG6P46379 1132 aa23.04■■□□□ 1.28
SDC1-203ENST00000403076 FLIIQ13045 1269 aa23.04■■□□□ 1.28
SDC1-203ENST00000403076 NBPF14Q5TI25 921 aa23.04■■□□□ 1.28
SDC1-203ENST00000403076 NBPF10Q6P3W6 841 aaKnown RBP23.04■■□□□ 1.28
SDC1-203ENST00000403076 NBPF15Q8N660 670 aa23.04■■□□□ 1.28
SDC1-203ENST00000403076 AIMP1Q12904 312 aaKnown RBP23.03■■□□□ 1.28
SDC1-203ENST00000403076 LRRC4BQ9NT99 713 aa23.03■■□□□ 1.28
SDC1-203ENST00000403076 ZBTB1Q9Y2K1 713 aa23.03■■□□□ 1.28
SDC1-203ENST00000403076 TNS1Q9HBL0 1735 aaKnown RBP23.03■■□□□ 1.28
SDC1-203ENST00000403076 FKBP5Q13451 457 aaPredicted RBP23.03■■□□□ 1.28
SDC1-203ENST00000403076 ZNF831Q5JPB2 1677 aa23.03■■□□□ 1.28
SDC1-203ENST00000403076 CCDC125Q86Z20 511 aa23.03■■□□□ 1.28
SDC1-203ENST00000403076 PTPRCP08575 1304 aa23.02■■□□□ 1.28
SDC1-203ENST00000403076 RNF123Q5XPI4 1314 aa23.02■■□□□ 1.28
SDC1-203ENST00000403076 EN1Q05925 392 aaPredicted RBP23.02■■□□□ 1.28
SDC1-203ENST00000403076 INTS5Q6P9B9 1019 aaKnown RBP23.02■■□□□ 1.28
SDC1-203ENST00000403076 PROM2Q8N271 834 aa23.02■■□□□ 1.28
SDC1-203ENST00000403076 CACNA1FO60840 1977 aa23.01■■□□□ 1.27
SDC1-203ENST00000403076 ATF7IPQ6VMQ6 1270 aa23.01■■□□□ 1.27
SDC1-203ENST00000403076 COPS6Q7L5N1 327 aa23.01■■□□□ 1.27
SDC1-203ENST00000403076 XAGE3Q8WTP9 111 aa23.01■■□□□ 1.27
SDC1-203ENST00000403076 ARHGAP45Q92619 1136 aa23.01■■□□□ 1.27
SDC1-203ENST00000403076 ARXQ96QS3 562 aa23.01■■□□□ 1.27
SDC1-203ENST00000403076 API5Q9BZZ5 524 aaKnown RBP23.01■■□□□ 1.27
SDC1-203ENST00000403076 CICQ96RK0 1608 aaPredicted RBP23.01■■□□□ 1.27
SDC1-203ENST00000403076 CNTNAP4Q9C0A0 1308 aa23■■□□□ 1.27
SDC1-203ENST00000403076 RC3H1Q5TC82 1133 aaKnown RBP23■■□□□ 1.27
SDC1-203ENST00000403076 CLUAP1Q96AJ1 413 aa23■■□□□ 1.27
SDC1-203ENST00000403076 DDX58O95786 925 aaKnown RBP22.99■■□□□ 1.27
SDC1-203ENST00000403076 NEFLP07196 543 aa22.99■■□□□ 1.27
SDC1-203ENST00000403076 MS4A1P11836 297 aa22.99■■□□□ 1.27
SDC1-203ENST00000403076 IL6STP40189 918 aaPredicted RBP22.99■■□□□ 1.27
SDC1-203ENST00000403076 FTSJ3Q8IY81 847 aaKnown RBP22.99■■□□□ 1.27
SDC1-203ENST00000403076 TRIM27P14373 513 aa22.98■■□□□ 1.27
SDC1-203ENST00000403076 EZH2Q15910 746 aaKnown RBP22.98■■□□□ 1.27
SDC1-203ENST00000403076 AK7Q96M32 723 aa22.98■■□□□ 1.27
SDC1-203ENST00000403076 CAMKK2Q96RR4 588 aa22.98■■□□□ 1.27
SDC1-203ENST00000403076 EP400Q96L91 3159 aa22.98■■□□□ 1.27
SDC1-203ENST00000403076 GNPATO15228 680 aa22.98■■□□□ 1.27
SDC1-203ENST00000403076 DEFB132Q7Z7B7 95 aa22.98■■□□□ 1.27
SDC1-203ENST00000403076 LRP10Q7Z4F1 713 aa22.97■■□□□ 1.27
SDC1-203ENST00000403076 DZIP1LQ8IYY4 767 aaKnown RBP22.97■■□□□ 1.27
SDC1-203ENST00000403076 TNNQ9UQP3 1299 aa22.97■■□□□ 1.27
SDC1-203ENST00000403076 COL5A3P25940 1745 aaPredicted RBP22.96■■□□□ 1.27
SDC1-203ENST00000403076 IRX6P78412 446 aaPredicted RBP22.96■■□□□ 1.27
SDC1-203ENST00000403076 RIC3Q7Z5B4 369 aa22.96■■□□□ 1.27
SDC1-203ENST00000403076 F6X3S4 739 aa22.95■■□□□ 1.26
SDC1-203ENST00000403076 RPS6KA4O75676 772 aa22.95■■□□□ 1.26
SDC1-203ENST00000403076 EIF5P55010 431 aaKnown RBP22.95■■□□□ 1.26
SDC1-203ENST00000403076 KIF6Q6ZMV9 814 aa22.95■■□□□ 1.26
SDC1-203ENST00000403076 TTLL7Q6ZT98 887 aa22.95■■□□□ 1.26
SDC1-203ENST00000403076 ANKRD13DQ6ZTN6 518 aa22.95■■□□□ 1.26
SDC1-203ENST00000403076 RTCBQ9Y3I0 505 aaKnown RBP22.95■■□□□ 1.26
SDC1-203ENST00000403076 TAF1LQ8IZX4 1826 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 PI4KAP2A4QPH2 592 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 PDE3AQ14432 1141 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 C20orf194Q5TEA3 1177 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 SLC4A10Q6U841 1118 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 KSR2Q6VAB6 950 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 PI4KAP1Q8N8J0 262 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 PANK1Q8TE04 598 aa22.94■■□□□ 1.26
SDC1-203ENST00000403076 MYH14Q7Z406 1995 aaKnown RBP22.94■■□□□ 1.26
SDC1-203ENST00000403076 C4BP0C0L5 1744 aa22.93■■□□□ 1.26
SDC1-203ENST00000403076 A0A087WZG4 1122 aa22.92■■□□□ 1.26
SDC1-203ENST00000403076 DZIP3Q86Y13 1208 aaKnown RBP22.92■■□□□ 1.26
SDC1-203ENST00000403076 DNAAF4Q8WXU2 420 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms