RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TCEANC2Q96MN5 208 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 PPP6R1Q9UPN7 881 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 CCDC83Q8IWF9 413 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 PEAK1Q9H792 1746 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 UBTFL1P0CB47 393 aaPredicted RBP25.32■■□□□ 1.64
CTCF-202ENST00000401394 DNM1Q05193 864 aaKnown RBP25.32■■□□□ 1.64
CTCF-202ENST00000401394 SASS6Q6UVJ0 657 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 NECAB1Q8N987 351 aa25.32■■□□□ 1.64
CTCF-202ENST00000401394 HAP1P54257 671 aaPredicted RBP25.31■■□□□ 1.64
CTCF-202ENST00000401394 INTS4Q96HW7 963 aaKnown RBP25.31■■□□□ 1.64
CTCF-202ENST00000401394 SRGAP3O43295 1099 aa25.3■■□□□ 1.64
CTCF-202ENST00000401394 PI4K2BQ8TCG2 481 aa25.3■■□□□ 1.64
CTCF-202ENST00000401394 PTH1RQ03431 593 aa25.3■■□□□ 1.64
CTCF-202ENST00000401394 GNAI3P08754 354 aa25.29■■□□□ 1.64
CTCF-202ENST00000401394 MCM2P49736 904 aa25.29■■□□□ 1.64
CTCF-202ENST00000401394 FERMT3Q86UX7 667 aa25.29■■□□□ 1.64
CTCF-202ENST00000401394 KCNQ3O43525 872 aa25.29■■□□□ 1.64
CTCF-202ENST00000401394 CASTP20810 708 aaKnown RBP25.29■■□□□ 1.64
CTCF-202ENST00000401394 KIF13AQ9H1H9 1805 aa25.29■■□□□ 1.64
CTCF-202ENST00000401394 WDR33Q9C0J8 1336 aaKnown RBP25.29■■□□□ 1.64
CTCF-202ENST00000401394 ZNF710Q8N1W2 664 aa25.29■■□□□ 1.64
CTCF-202ENST00000401394 CEP170BQ9Y4F5 1589 aaPredicted RBP25.28■■□□□ 1.64
CTCF-202ENST00000401394 NOLC1Q14978 699 aaKnown RBP eCLIP25.28■■□□□ 1.64
CTCF-202ENST00000401394 RHPN1Q8TCX5 695 aa25.28■■□□□ 1.64
CTCF-202ENST00000401394 STAP2Q9UGK3 403 aa25.28■■□□□ 1.64
CTCF-202ENST00000401394 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.28■■□□□ 1.64
CTCF-202ENST00000401394 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.28■■□□□ 1.64
CTCF-202ENST00000401394 STX6O43752 255 aa25.27■■□□□ 1.64
CTCF-202ENST00000401394 CCDC30Q5VVM6 783 aa25.27■■□□□ 1.64
CTCF-202ENST00000401394 ZSCAN22P10073 491 aaPredicted RBP25.27■■□□□ 1.64
CTCF-202ENST00000401394 CAMK4Q16566 473 aa25.27■■□□□ 1.64
CTCF-202ENST00000401394 CSPP1Q1MSJ5 1256 aa25.27■■□□□ 1.64
CTCF-202ENST00000401394 LSG1Q9H089 658 aaKnown RBP25.27■■□□□ 1.64
CTCF-202ENST00000401394 TERF1P54274 439 aa25.26■■□□□ 1.63
CTCF-202ENST00000401394 ANAPC15P60006 121 aa25.26■■□□□ 1.63
CTCF-202ENST00000401394 SGSM2O43147 1006 aa25.26■■□□□ 1.63
CTCF-202ENST00000401394 PA2G4Q9UQ80 394 aaKnown RBP25.26■■□□□ 1.63
CTCF-202ENST00000401394 SYAP1Q96A49 352 aaPredicted RBP25.26■■□□□ 1.63
CTCF-202ENST00000401394 TTC14Q96N46 770 aa25.26■■□□□ 1.63
CTCF-202ENST00000401394 PYCARDQ9ULZ3 195 aa25.26■■□□□ 1.63
CTCF-202ENST00000401394 VPS37CA5D8V6 355 aaPredicted RBP25.25■■□□□ 1.63
CTCF-202ENST00000401394 HDGFL1Q5TGJ6 251 aa25.25■■□□□ 1.63
CTCF-202ENST00000401394 PRPF40BQ6NWY9 871 aaKnown RBP25.25■■□□□ 1.63
CTCF-202ENST00000401394 PRDM4Q9UKN5 801 aa25.25■■□□□ 1.63
CTCF-202ENST00000401394 OVOS2A0A0J9YW53 1432 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 OVOS2Q6IE36 1432 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 DYNC1I1O14576 645 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 ST3GAL1Q11201 340 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 SETD1AO15047 1707 aaKnown RBP25.24■■□□□ 1.63
CTCF-202ENST00000401394 GJB2P29033 226 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 LTKP29376 864 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 ZHX1Q9UKY1 873 aaPredicted RBP25.24■■□□□ 1.63
CTCF-202ENST00000401394 TAF6LQ9Y6J9 622 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 C3P01024 1663 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 NRXN3Q9Y4C0 1643 aa25.24■■□□□ 1.63
CTCF-202ENST00000401394 TAF7Q15545 349 aaPredicted RBP25.23■■□□□ 1.63
CTCF-202ENST00000401394 CCDC183Q5T5S1 534 aa25.23■■□□□ 1.63
CTCF-202ENST00000401394 NGDNQ8NEJ9 315 aaKnown RBP25.23■■□□□ 1.63
CTCF-202ENST00000401394 SMC3Q9UQE7 1217 aa25.23■■□□□ 1.63
CTCF-202ENST00000401394 MCM5P33992 734 aa25.23■■□□□ 1.63
CTCF-202ENST00000401394 RAD50Q92878 1312 aa25.23■■□□□ 1.63
CTCF-202ENST00000401394 F13A1P00488 732 aa25.23■■□□□ 1.63
CTCF-202ENST00000401394 KCNF1Q9H3M0 494 aa25.23■■□□□ 1.63
CTCF-202ENST00000401394 JAKMIP1Q96N16 626 aaKnown RBP25.22■■□□□ 1.63
CTCF-202ENST00000401394 GNAT3A8MTJ3 354 aa25.22■■□□□ 1.63
CTCF-202ENST00000401394 SSH3Q8TE77 659 aa25.22■■□□□ 1.63
CTCF-202ENST00000401394 LGR6Q9HBX8 967 aa25.22■■□□□ 1.63
CTCF-202ENST00000401394 PI4KAP2A4QPH2 592 aa25.21■■□□□ 1.63
CTCF-202ENST00000401394 NLRP6P59044 892 aa25.21■■□□□ 1.63
CTCF-202ENST00000401394 CBX1P83916 185 aa25.21■■□□□ 1.63
CTCF-202ENST00000401394 C14orf37Q86TY3 774 aa25.21■■□□□ 1.63
CTCF-202ENST00000401394 PI4KAP1Q8N8J0 262 aa25.21■■□□□ 1.63
CTCF-202ENST00000401394 RBM33Q96EV2 1170 aaKnown RBP25.21■■□□□ 1.63
CTCF-202ENST00000401394 CHPF2Q9P2E5 772 aa25.21■■□□□ 1.63
CTCF-202ENST00000401394 USP6P35125 1406 aa25.2■■□□□ 1.63
CTCF-202ENST00000401394 OS9Q13438 667 aaPredicted RBP25.2■■□□□ 1.63
CTCF-202ENST00000401394 PIBF1Q8WXW3 757 aa25.2■■□□□ 1.63
CTCF-202ENST00000401394 MON2Q7Z3U7 1717 aa25.2■■□□□ 1.62
CTCF-202ENST00000401394 LIMCH1Q9UPQ0 1083 aa25.2■■□□□ 1.62
CTCF-202ENST00000401394 HYPKQ9NX55 129 aa25.19■■□□□ 1.62
CTCF-202ENST00000401394 KDM4AO75164 1064 aa25.19■■□□□ 1.62
CTCF-202ENST00000401394 CEBPAP49715 358 aaPredicted RBP25.19■■□□□ 1.62
CTCF-202ENST00000401394 CKAP2LQ8IYA6 745 aa25.19■■□□□ 1.62
CTCF-202ENST00000401394 MYRIPQ8NFW9 859 aa25.19■■□□□ 1.62
CTCF-202ENST00000401394 SPDYE4A6NLX3 237 aa25.18■■□□□ 1.62
CTCF-202ENST00000401394 ME3Q16798 604 aa25.18■■□□□ 1.62
CTCF-202ENST00000401394 MTMR6Q9Y217 621 aa25.18■■□□□ 1.62
CTCF-202ENST00000401394 TFIP11Q9UBB9 837 aaKnown RBP25.17■■□□□ 1.62
CTCF-202ENST00000401394 IGSF3O75054 1194 aa25.17■■□□□ 1.62
CTCF-202ENST00000401394 PHF14O94880 888 aa25.17■■□□□ 1.62
CTCF-202ENST00000401394 UBE2HP62256 183 aa25.17■■□□□ 1.62
CTCF-202ENST00000401394 FAM227BQ96M60 508 aa25.17■■□□□ 1.62
CTCF-202ENST00000401394 PRAMEF22A3QJZ6 481 aa25.16■■□□□ 1.62
CTCF-202ENST00000401394 CHGBP05060 677 aa25.16■■□□□ 1.62
CTCF-202ENST00000401394 ESF1Q9H501 851 aaKnown RBP25.16■■□□□ 1.62
CTCF-202ENST00000401394 SPATA31D1Q6ZQQ2 1576 aa25.16■■□□□ 1.62
CTCF-202ENST00000401394 LIG1P18858 919 aa25.16■■□□□ 1.62
CTCF-202ENST00000401394 ATP2B3Q16720 1220 aa25.16■■□□□ 1.62
CTCF-202ENST00000401394 PLEKHG3A1L390 1219 aa25.15■■□□□ 1.62
CTCF-202ENST00000401394 PPFIA3O75145 1194 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms