RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 NAPBQ9H115 298 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 MYO5CQ9NQX4 1742 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 APBA3O96018 575 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 RXRBP28702 533 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 TMPOP42166 694 aaKnown RBP9.38□□□□□ -0.91
USP47-203ENST00000399455 BIN2Q9UBW5 565 aaPredicted RBP9.38□□□□□ -0.91
USP47-203ENST00000399455 CCNL1Q9UK58 526 aaPredicted RBP9.38□□□□□ -0.91
USP47-203ENST00000399455 POTEJP0CG39 1038 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 FAM13BQ9NYF5 915 aa9.38□□□□□ -0.91
USP47-203ENST00000399455 PDE4BQ07343 736 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 ZBTB3Q9H5J0 574 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 UQCRFS1P1P0C7P4 283 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 IQCA1Q86XH1 822 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 AEBP1Q8IUX7 1158 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 ANKRD2Q9GZV1 360 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 DNAAF4Q8WXU2 420 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 KIF1BPQ96EK5 621 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 NUP160Q12769 1436 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 CCDC196A0A1B0GTZ2 297 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 AKAP4Q5JQC9 854 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 SMARCE1Q969G3 411 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 CRNKL1Q9BZJ0 848 aaKnown RBP9.37□□□□□ -0.91
USP47-203ENST00000399455 TBX22Q9Y458 520 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 NUP153P49790 1475 aaKnown RBP9.37□□□□□ -0.91
USP47-203ENST00000399455 CCDC12Q8WUD4 166 aaPredicted RBP9.37□□□□□ -0.91
USP47-203ENST00000399455 SIRT1Q96EB6 747 aa9.37□□□□□ -0.91
USP47-203ENST00000399455 MINDY4BA8MYZ0 360 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 NIP7Q9Y221 180 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP47-203ENST00000399455 U3KPZ7 1027 aaPredicted RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 NPATQ14207 1427 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 MAST1Q9Y2H9 1570 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 PIK3R4Q99570 1358 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 DDX49Q9Y6V7 483 aaKnown RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 PTPRCP08575 1304 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 BAG4O95429 457 aaKnown RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 ATP2B1P20020 1258 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 PPP1R12BO60237 982 aaPredicted RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 PDE3AQ14432 1141 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 C1orf115Q9H7X2 142 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 GNPATO15228 680 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 PDE6BP35913 854 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 ZNF710Q8N1W2 664 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 TRPC5Q9UL62 973 aaPredicted RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 H0YIN7 160 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 STK38Q15208 465 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 CTCFLQ8NI51 663 aaPredicted RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 LUC7LQ9NQ29 371 aaKnown RBP9.36□□□□□ -0.91
USP47-203ENST00000399455 YEATS2Q9ULM3 1422 aa9.36□□□□□ -0.91
USP47-203ENST00000399455 LETM1O95202 739 aaPredicted RBP9.35□□□□□ -0.91
USP47-203ENST00000399455 DZIP3Q86Y13 1208 aaKnown RBP9.35□□□□□ -0.91
USP47-203ENST00000399455 RPAP2Q8IXW5 612 aaPredicted RBP9.35□□□□□ -0.91
USP47-203ENST00000399455 RAB34Q9BZG1 259 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 LRRFIP2Q9Y608 721 aaKnown RBP9.35□□□□□ -0.91
USP47-203ENST00000399455 CA8P35219 290 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 MIS18AQ9NYP9 233 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 SHANK2Q9UPX8 1470 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 ALDH1L2Q3SY69 923 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 MAP3K2Q9Y2U5 619 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 GJA3Q9Y6H8 435 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 CHD1O14646 1710 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 CDR1P51861 262 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 ZC3H12CQ9C0D7 883 aaKnown RBP9.35□□□□□ -0.91
USP47-203ENST00000399455 ZRANB1Q9UGI0 708 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 EMILIN1Q9Y6C2 1016 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 PPM1FP49593 454 aaPredicted RBP9.35□□□□□ -0.91
USP47-203ENST00000399455 TCIRG1Q13488 830 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 TMEM266Q2M3C6 531 aa9.35□□□□□ -0.91
USP47-203ENST00000399455 TRAPPC8Q9Y2L5 1435 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 GPS2Q13227 327 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 SLAIN2Q9P270 581 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 KINO60870 393 aaKnown RBP9.34□□□□□ -0.91
USP47-203ENST00000399455 PLCG2P16885 1265 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 KIF5BP33176 963 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 SDF4Q9BRK5 362 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 PHAXQ9H814 394 aaKnown RBP9.34□□□□□ -0.91
USP47-203ENST00000399455 MAP4K4O95819 1239 aaPredicted RBP9.34□□□□□ -0.91
USP47-203ENST00000399455 TNNT3P45378 269 aaPredicted RBP9.34□□□□□ -0.91
USP47-203ENST00000399455 LDHAL6AQ6ZMR3 332 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 VEZTQ9HBM0 779 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 CATIPQ7Z7H3 387 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 YTHDC2Q9H6S0 1430 aaKnown RBP9.34□□□□□ -0.91
USP47-203ENST00000399455 CNBD1Q8NA66 436 aa9.34□□□□□ -0.91
USP47-203ENST00000399455 BCAR3O75815 825 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 SSBP05455 408 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP47-203ENST00000399455 FAM98CQ17RN3 349 aaKnown RBP9.33□□□□□ -0.92
USP47-203ENST00000399455 KDM6BO15054 1643 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 SMC2O95347 1197 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 DPY19L2Q6NUT2 758 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 CCAR2Q8N163 923 aaKnown RBP9.33□□□□□ -0.92
USP47-203ENST00000399455 DCAF5Q96JK2 942 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 CABLES1Q8TDN4 633 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 RANBP6O60518 1105 aaKnown RBP9.33□□□□□ -0.92
USP47-203ENST00000399455 ARHGEF6Q15052 776 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 C22orf23Q9BZE7 217 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 PDIA4P13667 645 aaKnown RBP9.33□□□□□ -0.92
USP47-203ENST00000399455 BLOC1S2Q6QNY1 142 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 CEP57L1Q8IYX8 460 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 ZSCAN31Q96LW9 406 aaPredicted RBP9.33□□□□□ -0.92
USP47-203ENST00000399455 TANGO6Q9C0B7 1094 aa9.33□□□□□ -0.92
USP47-203ENST00000399455 FLT4P35916 1363 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 792 ms