RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 WDR66Q8TBY9 1149 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 BOLA2Q9H3K6 86 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 MCM10Q7L590 875 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 DDX54Q8TDD1 881 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 PTPRCP08575 1304 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 POTEB2H3BUK9 544 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 GTF2F1P35269 517 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 TBC1D9Q6ZT07 1266 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 SARNPP82979 210 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 PRIMPOLQ96LW4 560 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 CPSF2Q9P2I0 782 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 DYNC1I1O14576 645 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 GBP2P32456 591 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 CKAP2LQ8IYA6 745 aa11.89□□□□□ -0.51
LIMCH1-203ENST00000396595 GOLGA6L9A6NEM1 432 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 PPP1R12BO60237 982 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 TAF7Q15545 349 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 STX6O43752 255 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 ADCY5O95622 1261 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 IGHMBP2P38935 993 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 STX1AQ16623 288 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 METTL24Q5JXM2 366 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 FSIP1Q8NA03 581 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 C16orf45Q96MC5 204 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 IFIT1P09914 478 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 SEPT6Q14141 434 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 KLHL10Q6JEL2 608 aa11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 RBM28Q9NW13 759 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-203ENST00000396595 CETN2P41208 172 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 UBE2HP62256 183 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 CEP63Q96MT8 703 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 MIS18AQ9NYP9 233 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 EPRSP07814 1512 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 PAFAH1B1P43034 410 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 KCNH5Q8NCM2 988 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 FGFR1OPO95684 399 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 ZNF287Q9HBT7 754 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 USO1O60763 962 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 VPS36Q86VN1 386 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 PAF1Q8N7H5 531 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 TSG101Q99816 390 aa11.87□□□□□ -0.51
LIMCH1-203ENST00000396595 ZNF165P49910 485 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 CNNM3Q8NE01 707 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 EVI5LQ96CN4 794 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 NAPBQ9H115 298 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 TRMT1Q9NXH9 659 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 NSD2O96028 1365 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 YEATS4O95619 227 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 RNF187Q5TA31 235 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 CACNA2D4Q7Z3S7 1137 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 ECHDC1Q9NTX5 307 aa11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 SUDS3Q9H7L9 328 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-203ENST00000396595 DESP17661 470 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 GJB2P29033 226 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 LUZP1Q86V48 1076 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 PRDM11Q9NQV5 511 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 IL16Q14005 1332 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 ZNF76P36508 570 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 CTCFLQ8NI51 663 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 GDPD2Q9HCC8 539 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 IFT140Q96RY7 1462 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 F6X3S4 739 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 GUCY1B3Q02153 619 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 ABCF2Q9UG63 623 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 PAXBP1Q9Y5B6 917 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 STARD3NLO95772 234 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 POTEJP0CG39 1038 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 MAP2K1Q02750 393 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 TTC22Q5TAA0 569 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 CTR9Q6PD62 1173 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 CLCN1P35523 988 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 TMC6Q7Z403 805 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 CCDC150Q8NCX0 1101 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 PIBF1Q8WXW3 757 aa11.85□□□□□ -0.51
LIMCH1-203ENST00000396595 ZNF213O14771 459 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 HDAC1Q13547 482 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 SNW1Q13573 536 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 BMS1Q14692 1282 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 AMOTQ4VCS5 1084 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 PPP4R3BQ5MIZ7 849 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 LRSAM1Q6UWE0 723 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 RAB34Q9BZG1 259 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 CCDC8Q9H0W5 538 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 RNF41Q9H4P4 317 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 MAP3K1Q13233 1512 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 SEC63Q9UGP8 760 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 GOLGA8BA8MQT2 603 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 POLR3GO15318 223 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 ZSCAN23Q3MJ62 389 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 CFAP57Q96MR6 1250 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 NUP88Q99567 741 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 SLC12A7Q9Y666 1083 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 KIF20AO95235 890 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 MAP3K12Q12852 859 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 SMARCC1Q92922 1105 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 HMG20BQ9P0W2 317 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 TFIP11Q9UBB9 837 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 TOPBP1Q92547 1522 aa11.84□□□□□ -0.51
LIMCH1-203ENST00000396595 IGHDP01880 384 aa11.83□□□□□ -0.51
LIMCH1-203ENST00000396595 CCDC91Q7Z6B0 441 aa11.83□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms