RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 GBP6Q6ZN66 633 aa13.71□□□□□ -0.22
SYNPO-202ENST00000394243 C8orf76Q96K31 380 aa13.71□□□□□ -0.22
SYNPO-202ENST00000394243 TBC1D32Q96NH3 1257 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 TAOK3Q9H2K8 898 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 EBAG9O00559 213 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 VPS36Q86VN1 386 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 WDR97A6NE52 1622 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 TMCO5BA8MYB1 307 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 MX1P20591 662 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 GJB2P29033 226 aa13.7□□□□□ -0.22
SYNPO-202ENST00000394243 SCAPERQ9BY12 1400 aa13.69□□□□□ -0.22
SYNPO-202ENST00000394243 ZSCAN25Q6NSZ9 544 aa13.69□□□□□ -0.22
SYNPO-202ENST00000394243 RAB11FIP3O75154 756 aa13.69□□□□□ -0.22
SYNPO-202ENST00000394243 LARP1Q6PKG0 1096 aaKnown RBP13.69□□□□□ -0.22
SYNPO-202ENST00000394243 ANAPC15P60006 121 aa13.69□□□□□ -0.22
SYNPO-202ENST00000394243 KRBA2Q6ZNG9 492 aa13.69□□□□□ -0.22
SYNPO-202ENST00000394243 DAAM2Q86T65 1068 aa13.69□□□□□ -0.22
SYNPO-202ENST00000394243 PRPF4BQ13523 1007 aaKnown RBP13.68□□□□□ -0.22
SYNPO-202ENST00000394243 CCDC121Q6ZUS5 278 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 HOOK3Q86VS8 718 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 TSG101Q99816 390 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 CTAGE15A4D2H0 777 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 CTAGE8P0CG41 777 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 NAA25Q14CX7 972 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 CTAGE6Q86UF2 777 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 CTAGE4Q8IX94 777 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 MYOM3Q5VTT5 1437 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 WIZO95785 1651 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 A0A1B0GUL7 405 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 MACROD2A1Z1Q3 448 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 ANO6Q4KMQ2 910 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 FEZ1Q99689 392 aa13.68□□□□□ -0.22
SYNPO-202ENST00000394243 TBC1D9Q6ZT07 1266 aa13.67□□□□□ -0.22
SYNPO-202ENST00000394243 CPSF2Q9P2I0 782 aaKnown RBP13.67□□□□□ -0.22
SYNPO-202ENST00000394243 PPP1R12BO60237 982 aaPredicted RBP13.67□□□□□ -0.22
SYNPO-202ENST00000394243 PRIM1P49642 420 aaKnown RBP13.67□□□□□ -0.22
SYNPO-202ENST00000394243 NBPF8Q3BBV2 869 aa13.67□□□□□ -0.22
SYNPO-202ENST00000394243 KIF6Q6ZMV9 814 aa13.67□□□□□ -0.22
SYNPO-202ENST00000394243 GTF3C6Q969F1 213 aa13.67□□□□□ -0.22
SYNPO-202ENST00000394243 POTEJP0CG39 1038 aa13.67□□□□□ -0.22
SYNPO-202ENST00000394243 CKAP4Q07065 602 aaKnown RBP13.67□□□□□ -0.22
SYNPO-202ENST00000394243 SULT6B1Q6IMI4 303 aa13.67□□□□□ -0.22
SYNPO-202ENST00000394243 U3KPZ7 1027 aaPredicted RBP13.67□□□□□ -0.22
SYNPO-202ENST00000394243 FSD2A1L4K1 749 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 NBPF11Q86T75 865 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 OPA1O60313 960 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 CAVIN2O95810 425 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 NOP2P46087 812 aaKnown RBP13.66□□□□□ -0.22
SYNPO-202ENST00000394243 UBASH3AP57075 661 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 STAC3Q96MF2 364 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 GNL3LQ9NVN8 582 aaKnown RBP13.66□□□□□ -0.22
SYNPO-202ENST00000394243 RRBP1Q9P2E9 1410 aaKnown RBP13.66□□□□□ -0.22
SYNPO-202ENST00000394243 PHACTR2O75167 634 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 DESP17661 470 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 NSRP1Q9H0G5 558 aaKnown RBP13.66□□□□□ -0.22
SYNPO-202ENST00000394243 RRAGDQ9NQL2 400 aaPredicted RBP13.66□□□□□ -0.22
SYNPO-202ENST00000394243 NLRP2Q9NX02 1062 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 CEP83Q9Y592 693 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 GOLGA1Q92805 767 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 CCDC114Q96M63 670 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 MTIF2P46199 727 aaKnown RBP13.66□□□□□ -0.22
SYNPO-202ENST00000394243 ANKS4BQ8N8V4 417 aa13.66□□□□□ -0.22
SYNPO-202ENST00000394243 FGFR1OPO95684 399 aaKnown RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 ZNF644Q9H582 1327 aaPredicted RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 KIF20AO95235 890 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 CCDC96Q2M329 555 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 GLRX3O76003 335 aaKnown RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 NEBLO76041 1014 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 RARSP54136 660 aaKnown RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 RSRC1Q96IZ7 334 aaKnown RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 CCT2P78371 535 aaKnown RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 SARNPP82979 210 aaKnown RBP13.65□□□□□ -0.22
SYNPO-202ENST00000394243 CCDC155Q8N6L0 562 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 SLC12A5Q9H2X9 1139 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 ZEB2O60315 1214 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 HS1BP3Q53T59 392 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 DRC1Q96MC2 740 aa13.65□□□□□ -0.22
SYNPO-202ENST00000394243 KIF1BPQ96EK5 621 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 NLRP6P59044 892 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 PAIP2Q9BPZ3 127 aaKnown RBP13.64□□□□□ -0.23
SYNPO-202ENST00000394243 NKTRP30414 1462 aaKnown RBP13.64□□□□□ -0.23
SYNPO-202ENST00000394243 A0A1W2PRG0 241 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 MYL6BP14649 208 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 EHBP1Q8NDI1 1231 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 CUX1P39880 1505 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 DNAJC21Q5F1R6 531 aaKnown RBP13.64□□□□□ -0.23
SYNPO-202ENST00000394243 USP48Q86UV5 1035 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 HOMER2Q9NSB8 354 aa13.64□□□□□ -0.23
SYNPO-202ENST00000394243 CFAP70Q5T0N1 1121 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 CNPY2Q9Y2B0 182 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 KIF4AO95239 1232 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 KIF5BP33176 963 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 MYO1BO43795 1136 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 BOLA2Q9H3K6 86 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 DCAF8L1A6NGE4 600 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 MXRA7P84157 204 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 PLEKHO1Q53GL0 409 aaPredicted RBP13.63□□□□□ -0.23
SYNPO-202ENST00000394243 FAM200AQ8TCP9 573 aa13.63□□□□□ -0.23
SYNPO-202ENST00000394243 SPINK5Q9NQ38 1064 aaPredicted RBP13.63□□□□□ -0.23
SYNPO-202ENST00000394243 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms