RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CCT4P50991 539 aaKnown RBP12.63□□□□□ -0.39
COL6A3-205ENST00000392004 MEIS3Q99687 375 aa12.63□□□□□ -0.39
COL6A3-205ENST00000392004 VAMP4O75379 141 aa12.63□□□□□ -0.39
COL6A3-205ENST00000392004 TEX13AQ9BXU3 409 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-205ENST00000392004 RBM5P52756 815 aaKnown RBP eCLIP12.63□□□□□ -0.39
COL6A3-205ENST00000392004 SOS2Q07890 1332 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-205ENST00000392004 POLR1AO95602 1720 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-205ENST00000392004 METTL24Q5JXM2 366 aa12.62□□□□□ -0.39
COL6A3-205ENST00000392004 TTLL7Q6ZT98 887 aa12.62□□□□□ -0.39
COL6A3-205ENST00000392004 TSHZ3Q63HK5 1081 aa12.62□□□□□ -0.39
COL6A3-205ENST00000392004 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-205ENST00000392004 ZBTB1Q9Y2K1 713 aa12.62□□□□□ -0.39
COL6A3-205ENST00000392004 MVPQ14764 893 aaKnown RBP12.61□□□□□ -0.39
COL6A3-205ENST00000392004 CEP126Q9P2H0 1117 aa12.61□□□□□ -0.39
COL6A3-205ENST00000392004 PROSER3Q2NL68 480 aa12.61□□□□□ -0.39
COL6A3-205ENST00000392004 CCDC8Q9H0W5 538 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-205ENST00000392004 IGHMBP2P38935 993 aaKnown RBP12.61□□□□□ -0.39
COL6A3-205ENST00000392004 IFIT5Q13325 482 aaKnown RBP12.61□□□□□ -0.39
COL6A3-205ENST00000392004 SNRKQ9NRH2 765 aa12.61□□□□□ -0.39
COL6A3-205ENST00000392004 FOXD4L1Q9NU39 408 aa12.61□□□□□ -0.39
COL6A3-205ENST00000392004 ZBTB7AO95365 584 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 NCBP3Q53F19 620 aaKnown RBP12.6□□□□□ -0.39
COL6A3-205ENST00000392004 LDHAL6AQ6ZMR3 332 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 CWC25Q9NXE8 425 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-205ENST00000392004 IGSF1Q8N6C5 1336 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 LMBR1LQ6UX01 489 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 ANKARQ7Z5J8 1434 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 TMEM131LA2VDJ0 1609 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 ILDR1Q86SU0 546 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-205ENST00000392004 AACSQ86V21 672 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 KLHDC4Q8TBB5 520 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 PTCH1Q13635 1447 aa12.6□□□□□ -0.39
COL6A3-205ENST00000392004 PA2G4Q9UQ80 394 aaKnown RBP12.59□□□□□ -0.39
COL6A3-205ENST00000392004 BCORL1Q5H9F3 1711 aa12.59□□□□□ -0.39
COL6A3-205ENST00000392004 DIAPH3Q9NSV4 1193 aa12.59□□□□□ -0.39
COL6A3-205ENST00000392004 ATP7BP35670 1465 aa12.59□□□□□ -0.39
COL6A3-205ENST00000392004 RLBP1P12271 317 aa12.59□□□□□ -0.39
COL6A3-205ENST00000392004 EIF4A1P60842 406 aaKnown RBP12.59□□□□□ -0.39
COL6A3-205ENST00000392004 SRP68Q9UHB9 627 aaKnown RBP12.59□□□□□ -0.39
COL6A3-205ENST00000392004 NSFL1CQ9UNZ2 370 aaKnown RBP12.59□□□□□ -0.39
COL6A3-205ENST00000392004 TULP4Q9NRJ4 1543 aa12.59□□□□□ -0.39
COL6A3-205ENST00000392004 CCDC87Q9NVE4 849 aa12.59□□□□□ -0.39
COL6A3-205ENST00000392004 C3P01024 1663 aa12.58□□□□□ -0.39
COL6A3-205ENST00000392004 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.58□□□□□ -0.4
COL6A3-205ENST00000392004 CHL1O00533 1208 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 MARCH10Q8NA82 808 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-205ENST00000392004 UBE2Q2Q8WVN8 375 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 SLC4A8Q2Y0W8 1093 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 FBXO41Q8TF61 875 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 PARP3Q9Y6F1 533 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 GLIPR1L2Q4G1C9 344 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 USPL1Q5W0Q7 1092 aa12.58□□□□□ -0.4
COL6A3-205ENST00000392004 DDX46Q7L014 1031 aaKnown RBP12.58□□□□□ -0.4
COL6A3-205ENST00000392004 MST1RQ04912 1400 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 POLD1P28340 1107 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 NLRP3Q96P20 1036 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 KDM4AO75164 1064 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 GIGYF1O75420 1035 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-205ENST00000392004 CRKLP46109 303 aaKnown RBP12.57□□□□□ -0.4
COL6A3-205ENST00000392004 PODXL2Q9NZ53 605 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 KDM5AP29375 1690 aaKnown RBP12.57□□□□□ -0.4
COL6A3-205ENST00000392004 CPS1P31327 1500 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 RIMBP2O15034 1052 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 PPP1R42Q7Z4L9 355 aa12.57□□□□□ -0.4
COL6A3-205ENST00000392004 DDX21Q9NR30 783 aaKnown RBP eCLIP12.57□□□□□ -0.4
COL6A3-205ENST00000392004 F8W031 263 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-205ENST00000392004 IDH1O75874 414 aaKnown RBP12.56□□□□□ -0.4
COL6A3-205ENST00000392004 KSR2Q6VAB6 950 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 TPTE2Q6XPS3 522 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 FSD1Q9BTV5 496 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 ANO2Q9NQ90 1003 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 HTATSF1O43719 755 aaKnown RBP12.56□□□□□ -0.4
COL6A3-205ENST00000392004 BECN1Q14457 450 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 PDZRN3Q9UPQ7 1066 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 MROH2AA6NES4 1674 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 VWDEQ8N2E2 1590 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 ERVV-2B6SEH9 535 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 PDE3AQ14432 1141 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 TRPM1Q7Z4N2 1603 aa12.56□□□□□ -0.4
COL6A3-205ENST00000392004 HSP90AB3PQ58FF7 597 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 FAM43AQ8N2R8 423 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 PLEKHF1Q96S99 279 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 BOLA2Q9H3K6 86 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 USP19O94966 1318 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 SPATA31A6Q5VVP1 1343 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 IRS4O14654 1257 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-205ENST00000392004 HSP90B1P14625 803 aaKnown RBP12.55□□□□□ -0.4
COL6A3-205ENST00000392004 TTC39AQ5SRH9 613 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 NOL10Q9BSC4 688 aaKnown RBP12.55□□□□□ -0.4
COL6A3-205ENST00000392004 CNBD1Q8NA66 436 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 NPC1L1Q9UHC9 1359 aa12.55□□□□□ -0.4
COL6A3-205ENST00000392004 ST5P78524 1137 aa12.54□□□□□ -0.4
COL6A3-205ENST00000392004 ZNF594Q96JF6 807 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-205ENST00000392004 DIP2AQ14689 1571 aa12.54□□□□□ -0.4
COL6A3-205ENST00000392004 R3HDM1Q15032 1099 aaKnown RBP12.54□□□□□ -0.4
COL6A3-205ENST00000392004 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
COL6A3-205ENST00000392004 ANKRD18BA2A2Z9 1011 aa12.54□□□□□ -0.4
COL6A3-205ENST00000392004 UTP14AQ9BVJ6 771 aaKnown RBP12.54□□□□□ -0.4
COL6A3-205ENST00000392004 GRM8O00222 908 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 HSP90AB4PQ58FF6 505 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms