RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TMEM87AQ8NBN3 555 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 NAA15Q9BXJ9 866 aaKnown RBP14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 RNF41Q9H4P4 317 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 SLC12A7Q9Y666 1083 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 SYCE3A1L190 88 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 YEATS4O95619 227 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 MCM4P33991 863 aa14.83□□□□□ -0.04
CCDC88C-204ENST00000389857 POTEB2H3BUK9 544 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 ALS2CR12Q96Q35 445 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 KLHL10Q6JEL2 608 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 TMOD3Q9NYL9 352 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 KIF4BQ2VIQ3 1234 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 FERMT1Q9BQL6 677 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 SPDYE4A6NLX3 237 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 MX1P20591 662 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 FAM107BQ9H098 131 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 IGF1RP08069 1367 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 DRC1Q96MC2 740 aa14.82□□□□□ -0.04
CCDC88C-204ENST00000389857 AMPD3Q01432 767 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 STXBP4Q6ZWJ1 553 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 PYM1Q9BRP8 204 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 DAPK1P53355 1430 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 RRS1Q15050 365 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 CCDC12Q8WUD4 166 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 EFCAB5A4FU69 1503 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 GRIN2BQ13224 1484 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 CATIPQ7Z7H3 387 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 FAM114A1Q8IWE2 563 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 AFAP1Q8N556 730 aa14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 BCCIPQ9P287 314 aaKnown RBP eCLIP14.81□□□□□ -0.04
CCDC88C-204ENST00000389857 TTC21AQ8NDW8 1320 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 CHMP4BP1P59074 171 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 COMMD10Q9Y6G5 202 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 CALML4Q96GE6 196 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 CGNQ9P2M7 1197 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 PABPN1LA6NDY0 278 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 ZNF213O14771 459 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 UBE4AQ14139 1066 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 CCDC85AQ96PX6 553 aaPredicted RBP14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 ESPNB1AK53 854 aa14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 RRP9O43818 475 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 PRPF40BQ6NWY9 871 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-204ENST00000389857 CCDC194A0A1B0GVG4 234 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 NLRP5P59047 1200 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 CNNM3Q8NE01 707 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 IFIT5Q13325 482 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 RPGRQ92834 1020 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 TSNARE1Q96NA8 513 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 CLIP2Q9UDT6 1046 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 NEMFO60524 1076 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 FERP16591 822 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 TDRD12Q587J7 1177 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 ZSCAN30Q86W11 494 aa14.79□□□□□ -0.04
CCDC88C-204ENST00000389857 RANBP6O60518 1105 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 HOMER2Q9NSB8 354 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 DDX12PQ92771 950 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 URI1O94763 535 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 PIP4K2BP78356 416 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 TMEM57Q8N5G2 664 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 NSD3Q9BZ95 1437 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 CCDC175P0C221 793 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 DUSP27Q5VZP5 1158 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 MPHOSPH6Q99547 160 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 GSDMDP57764 484 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 MYD88Q99836 296 aa14.78□□□□□ -0.04
CCDC88C-204ENST00000389857 TTLL12Q14166 644 aaPredicted RBP14.77□□□□□ -0.04
CCDC88C-204ENST00000389857 AMOTQ4VCS5 1084 aa14.77□□□□□ -0.04
CCDC88C-204ENST00000389857 MACROD2A1Z1Q3 448 aa14.77□□□□□ -0.04
CCDC88C-204ENST00000389857 PRKCSHP14314 528 aaPredicted RBP14.77□□□□□ -0.04
CCDC88C-204ENST00000389857 NBPF1Q3BBV0 1214 aa14.77□□□□□ -0.04
CCDC88C-204ENST00000389857 LRRC27Q9C0I9 530 aa14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 TMPOP42166 694 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 ALDH1L2Q3SY69 923 aa14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 CFTRP13569 1480 aa14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 KIF5BP33176 963 aa14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 MTIF2P46199 727 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 EXOC6BQ9Y2D4 811 aa14.77□□□□□ -0.05
CCDC88C-204ENST00000389857 FSD2A1L4K1 749 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 GOLGA6L9A6NEM1 432 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 TTF1Q15361 905 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 BOLA2Q9H3K6 86 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 GOLGA8AA7E2F4 631 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 GOLGA8BA8MQT2 603 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 TCP11L1Q9NUJ3 509 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 AQRO60306 1485 aaKnown RBP eCLIP14.76□□□□□ -0.054e-7■■■■■ 29.4
CCDC88C-204ENST00000389857 IFI16Q16666 785 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 SPATA24Q86W54 205 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 LRRC45Q96CN5 670 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 PRG4Q92954 1404 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 KANK3Q6NY19 840 aa14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 RNF187Q5TA31 235 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 SREK1Q8WXA9 508 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-204ENST00000389857 SPECC1Q5M775 1068 aa14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 IFIT3O14879 490 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 STX1AQ16623 288 aa14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 SPECC1LQ69YQ0 1117 aa14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 BBXQ8WY36 941 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 SSX2IPQ9Y2D8 614 aa14.75□□□□□ -0.05
CCDC88C-204ENST00000389857 C6orf163Q5TEZ5 329 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms