RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 COL18A1P39060 1754 aa13.05□□□□□ -0.32
POLR2J3-201ENST00000379340 COL14A1Q05707 1796 aaKnown RBP13.05□□□□□ -0.32
POLR2J3-201ENST00000379340 GNAI3P08754 354 aa13.04□□□□□ -0.32
POLR2J3-201ENST00000379340 ERBB3P21860 1342 aa13.04□□□□□ -0.32
POLR2J3-201ENST00000379340 EIF4A1P60842 406 aaKnown RBP13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 FKBP5Q13451 457 aaPredicted RBP13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 HDGFL1Q5TGJ6 251 aa13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 MEIS3Q99687 375 aa13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 NUP188Q5SRE5 1749 aa13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 RNMTO43148 476 aaKnown RBP13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 APBA3O96018 575 aa13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 GNAI2P04899 355 aa13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 C22orf23Q9BZE7 217 aa13.03□□□□□ -0.32
POLR2J3-201ENST00000379340 RREB1Q92766 1687 aa13.02□□□□□ -0.33
POLR2J3-201ENST00000379340 SLC4A10Q6U841 1118 aa13.02□□□□□ -0.33
POLR2J3-201ENST00000379340 BTBD11A6QL63 1104 aa13.01□□□□□ -0.33
POLR2J3-201ENST00000379340 LGR6Q9HBX8 967 aa13.01□□□□□ -0.33
POLR2J3-201ENST00000379340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.01□□□□□ -0.33
POLR2J3-201ENST00000379340 SPATA31A1Q5TZJ5 1347 aa13.01□□□□□ -0.33
POLR2J3-201ENST00000379340 CPDO75976 1380 aa13.01□□□□□ -0.33
POLR2J3-201ENST00000379340 SCN11AQ9UI33 1791 aa13.01□□□□□ -0.33
POLR2J3-201ENST00000379340 F6X3S4 739 aa13□□□□□ -0.33
POLR2J3-201ENST00000379340 MFAP1P55081 439 aaKnown RBP13□□□□□ -0.33
POLR2J3-201ENST00000379340 NBR1Q14596 966 aa13□□□□□ -0.33
POLR2J3-201ENST00000379340 CHRNA2Q15822 529 aa13□□□□□ -0.33
POLR2J3-201ENST00000379340 AXIN2Q9Y2T1 843 aa13□□□□□ -0.33
POLR2J3-201ENST00000379340 CDC45O75419 566 aa12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 RBM25P49756 843 aaKnown RBP12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 FAM196AQ6ZSG2 479 aa12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 PLEKHM2Q8IWE5 1019 aa12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 RAPGEF4Q8WZA2 1011 aa12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 PKD1L3Q7Z443 1732 aa12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 HEG1Q9ULI3 1381 aa12.99□□□□□ -0.33
POLR2J3-201ENST00000379340 TATP17735 454 aaPredicted RBP12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 TTC22Q5TAA0 569 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 MPRIPQ6WCQ1 1025 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 PRDM11Q9NQV5 511 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 SLC4A3P48751 1232 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 ZC3H6P61129 1189 aaKnown RBP12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 ATP8B2P98198 1209 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 STRN4Q9NRL3 753 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 SPG7Q9UQ90 795 aa12.98□□□□□ -0.33
POLR2J3-201ENST00000379340 SRCIN1Q9C0H9 1055 aa12.97□□□□□ -0.33
POLR2J3-201ENST00000379340 DBF4Q9UBU7 674 aaPredicted RBP12.97□□□□□ -0.33
POLR2J3-201ENST00000379340 MRC1P22897 1456 aa12.97□□□□□ -0.33
POLR2J3-201ENST00000379340 PARP4Q9UKK3 1724 aaKnown RBP12.97□□□□□ -0.33
POLR2J3-201ENST00000379340 NECTIN2Q92692 538 aa12.96□□□□□ -0.33
POLR2J3-201ENST00000379340 OSBPL3Q9H4L5 887 aa12.96□□□□□ -0.33
POLR2J3-201ENST00000379340 SPON1Q9HCB6 807 aa12.96□□□□□ -0.33
POLR2J3-201ENST00000379340 PPP1R1BQ9UD71 204 aaPredicted RBP12.96□□□□□ -0.33
POLR2J3-201ENST00000379340 KCNQ2O43526 872 aa12.95□□□□□ -0.34
POLR2J3-201ENST00000379340 UBTFL1P0CB47 393 aaPredicted RBP12.95□□□□□ -0.34
POLR2J3-201ENST00000379340 TBC1D9Q6ZT07 1266 aa12.95□□□□□ -0.34
POLR2J3-201ENST00000379340 PDGFDQ9GZP0 370 aaPredicted RBP12.95□□□□□ -0.34
POLR2J3-201ENST00000379340 NLRP2Q9NX02 1062 aa12.95□□□□□ -0.34
POLR2J3-201ENST00000379340 HDAC5Q9UQL6 1122 aa12.95□□□□□ -0.34
POLR2J3-201ENST00000379340 HSP90AB1P08238 724 aaKnown RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 CASC1Q6TDU7 716 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 IFNL2Q8IZJ0 200 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 DNAAF4Q8WXU2 420 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 TBC1D2Q9BYX2 928 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 PHAXQ9H814 394 aaKnown RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 CHPF2Q9P2E5 772 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 IBTKQ9P2D0 1353 aaPredicted RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 MEGF6O75095 1541 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 GIGYF1O75420 1035 aaPredicted RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 CSB-PGBD3P0DP91 1061 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 GSPT1P15170 499 aaKnown RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 NBPF14Q5TI25 921 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 ZNF784Q8NCA9 323 aaPredicted RBP12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 USP44Q9H0E7 712 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 HYPKQ9NX55 129 aa12.94□□□□□ -0.34
POLR2J3-201ENST00000379340 KDM6AO15550 1401 aaPredicted RBP12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 KCNQ3O43525 872 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 ALDH1L1O75891 902 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 PHKG2P15735 406 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 HSCBQ8IWL3 235 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 SNX21Q969T3 373 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 LRRCC1Q9C099 1032 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 SLC52A2Q9HAB3 445 aa12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 ANO8Q9HCE9 1232 aaPredicted RBP12.93□□□□□ -0.34
POLR2J3-201ENST00000379340 RAB11FIP3O75154 756 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 NFKBIBQ15653 356 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 BEND3Q5T5X7 828 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 LARP1Q6PKG0 1096 aaKnown RBP12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 PTF1AQ7RTS3 328 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 SSH3Q8TE77 659 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 LRRFIP2Q9Y608 721 aaKnown RBP12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 TUBGCP6Q96RT7 1819 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 AOX1Q06278 1338 aa12.92□□□□□ -0.34
POLR2J3-201ENST00000379340 DDX58O95786 925 aaKnown RBP12.91□□□□□ -0.34
POLR2J3-201ENST00000379340 DCAF5Q96JK2 942 aa12.91□□□□□ -0.34
POLR2J3-201ENST00000379340 ADCY9O60503 1353 aa12.91□□□□□ -0.34
POLR2J3-201ENST00000379340 PI4KAP2A4QPH2 592 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 POLA2Q14181 598 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 KSR2Q6VAB6 950 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 BARGINQ6ZT62 677 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 C16orf71Q8IYS4 520 aaPredicted RBP12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 PI4KAP1Q8N8J0 262 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms