RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 MAP3K9P80192 1104 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 GOLGA6L7A0A1B0GV03 622 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 POLR3GO15318 223 aaPredicted RBP13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 HMGB2P26583 209 aaKnown RBP13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 EAPPQ56P03 285 aaPredicted RBP13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 SOGA3Q5TF21 947 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 GUCY1B3Q02153 619 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 DUSP27Q5VZP5 1158 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 TRERF1Q96PN7 1200 aa13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 LRPPRCP42704 1394 aaKnown RBP13.97□□□□□ -0.17
PCDHA9-201ENST00000378122 TNNT1P13805 278 aa13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 ZRSR2Q15696 482 aaKnown RBP13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 IMMTQ16891 758 aaKnown RBP13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 CTNNA3Q9UI47 895 aa13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 TROQ12816 1431 aaPredicted RBP13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 GNAT3A8MTJ3 354 aa13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 ST5P78524 1137 aa13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 POLR3DP05423 398 aaPredicted RBP13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 EIF5P55010 431 aaKnown RBP13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 KRT28Q7Z3Y7 464 aa13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 PLEKHH1Q9ULM0 1364 aa13.96□□□□□ -0.17
PCDHA9-201ENST00000378122 F8W031 263 aaPredicted RBP13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 GPTP24298 496 aa13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 ARHGAP29Q52LW3 1261 aa13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 CKAP2LQ8IYA6 745 aa13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 TRMT1Q9NXH9 659 aaKnown RBP13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 UBAC1Q9BSL1 405 aa13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 GDPD2Q9HCC8 539 aa13.96□□□□□ -0.18
PCDHA9-201ENST00000378122 IGHDP01880 384 aa13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 UBE2Q2Q8WVN8 375 aa13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 RAB11FIP3O75154 756 aa13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 ALDH1L2Q3SY69 923 aa13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 KIF18AQ8NI77 898 aa13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 C16orf45Q96MC5 204 aaPredicted RBP13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 ANO10Q9NW15 660 aa13.95□□□□□ -0.18
PCDHA9-201ENST00000378122 WASF1Q92558 559 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 KIF1BPQ96EK5 621 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 MSH6P52701 1360 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 NCKAP5LQ9HCH0 1330 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 URI1O94763 535 aaPredicted RBP13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 WAPLQ7Z5K2 1190 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 CAMSAP2Q08AD1 1489 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 ATAD2Q6PL18 1390 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 MYO1BO43795 1136 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 BOLA2Q9H3K6 86 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 CEP131Q9UPN4 1083 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 KIF2AO00139 706 aaPredicted RBP13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 ADCY5O95622 1261 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 SFPQP23246 707 aaKnown RBP eCLIP13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 GIMAP7Q8NHV1 300 aa13.94□□□□□ -0.18
PCDHA9-201ENST00000378122 SHTN1A0MZ66 631 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 ZSCAN12O43309 604 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 TBC1D9Q6ZT07 1266 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 F6X3S4 739 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 IDH1O75874 414 aaKnown RBP13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 ZSCAN23Q3MJ62 389 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 GJB2P29033 226 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 KLHL10Q6JEL2 608 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 FAM135AQ9P2D6 1515 aa13.93□□□□□ -0.18
PCDHA9-201ENST00000378122 NF2P35240 595 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 ZMYND15Q9H091 742 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 CALCOCO1Q9P1Z2 691 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 DZIP1Q86YF9 867 aaKnown RBP13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 ZNF397Q8NF99 534 aaPredicted RBP13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 PARP3Q9Y6F1 533 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 TOP1P11387 765 aaKnown RBP13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 TAF4BQ92750 862 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 CRACR2AQ9BSW2 395 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 GBP3Q9H0R5 595 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 EPRSP07814 1512 aaKnown RBP13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 GTF2F1P35269 517 aaKnown RBP eCLIP13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 NCOA1Q15788 1441 aa13.92□□□□□ -0.18
PCDHA9-201ENST00000378122 AIDAQ96BJ3 306 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 KIF5CO60282 957 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 TRIM27P14373 513 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 STK32BQ9NY57 414 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 AMOTL2Q9Y2J4 779 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 GLRX3O76003 335 aaKnown RBP13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 PLS1Q14651 629 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 CEP126Q9P2H0 1117 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 MYD88Q99836 296 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 VEZTQ9HBM0 779 aa13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 SH2B1Q9NRF2 756 aaPredicted RBP13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.91□□□□□ -0.18
PCDHA9-201ENST00000378122 BAG4O95429 457 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 FBXO31Q5XUX0 539 aaPredicted RBP13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 CCDC8Q9H0W5 538 aaPredicted RBP13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 DYNC1I1O14576 645 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 CCDC96Q2M329 555 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 MRC2Q9UBG0 1479 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 SCAND2PQ9GZW5 306 aaPredicted RBP13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 LIMCH1Q9UPQ0 1083 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 SNAPC4Q5SXM2 1469 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 PDIA4P13667 645 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 CAVIN4Q5BKX8 364 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 JAKMIP3Q5VZ66 844 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 TMC6Q7Z403 805 aa13.9□□□□□ -0.18
PCDHA9-201ENST00000378122 NCAPD3P42695 1498 aa13.9□□□□□ -0.19
PCDHA9-201ENST00000378122 CCDC141Q6ZP82 1450 aa13.9□□□□□ -0.19
PCDHA9-201ENST00000378122 CPLX3Q8WVH0 158 aa13.9□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms