RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ATP4AP20648 1035 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 RGS19P49795 217 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 CLDN10P78369 228 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 SRSF11Q05519 484 aaKnown RBP4.93□□□□□ -1.62
VPS13A-206ENST00000376646 LSRQ86X29 649 aaPredicted RBP4.93□□□□□ -1.62
VPS13A-206ENST00000376646 ZNF295-AS1Q8N0V1 137 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 GLMNQ92990 594 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 MBIPQ9NS73 344 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 ZNF358Q9NW07 568 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 ARHGEF15O94989 841 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 CELA2BP08218 269 aaPredicted RBP4.93□□□□□ -1.62
VPS13A-206ENST00000376646 FOXR1Q6PIV2 292 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 TNS4Q8IZW8 715 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 ABHD17AQ96GS6 310 aa4.93□□□□□ -1.62
VPS13A-206ENST00000376646 MX2P20592 715 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 NFATC2IPQ8NCF5 419 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 TPCN2Q8NHX9 752 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 KLRG1Q96E93 195 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 GMCL1Q96IK5 515 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 TRERF1Q96PN7 1200 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 SLC4A9Q96Q91 983 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 HCN2Q9UL51 889 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 ZBTB7BO15156 539 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-206ENST00000376646 CSB-PGBD3P0DP91 1061 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 SH3PXD2AQ5TCZ1 1133 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 PGBD3Q8N328 593 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 ACDQ96AP0 544 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 ZNF594Q96JF6 807 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-206ENST00000376646 NIFKQ9BYG3 293 aaKnown RBP4.92□□□□□ -1.62
VPS13A-206ENST00000376646 CABP1Q9NZU7 370 aa4.92□□□□□ -1.62
VPS13A-206ENST00000376646 ATP9BO43861 1147 aa4.91□□□□□ -1.62
VPS13A-206ENST00000376646 LGR5O75473 907 aa4.91□□□□□ -1.62
VPS13A-206ENST00000376646 MTFR1Q15390 333 aa4.91□□□□□ -1.62
VPS13A-206ENST00000376646 ZDHHC1Q8WTX9 485 aa4.91□□□□□ -1.62
VPS13A-206ENST00000376646 TFIP11Q9UBB9 837 aaKnown RBP4.91□□□□□ -1.62
VPS13A-206ENST00000376646 BNIP3LO60238 219 aa4.9□□□□□ -1.62
VPS13A-206ENST00000376646 TXLNAP40222 546 aa4.9□□□□□ -1.62
VPS13A-206ENST00000376646 DNAAF2Q9NVR5 837 aaKnown RBP4.9□□□□□ -1.62
VPS13A-206ENST00000376646 MKRN1Q9UHC7 482 aaKnown RBP4.9□□□□□ -1.62
VPS13A-206ENST00000376646 CDK2AP1O14519 115 aa4.9□□□□□ -1.63
VPS13A-206ENST00000376646 C2CD2LO14523 706 aa4.9□□□□□ -1.63
VPS13A-206ENST00000376646 EPHA4P54764 986 aa4.9□□□□□ -1.63
VPS13A-206ENST00000376646 CTBSQ01459 385 aa4.9□□□□□ -1.63
VPS13A-206ENST00000376646 ARSJQ5FYB0 599 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-206ENST00000376646 OGFOD1Q8N543 542 aa4.9□□□□□ -1.63
VPS13A-206ENST00000376646 GAS2L2Q8NHY3 880 aa4.9□□□□□ -1.63
VPS13A-206ENST00000376646 SCHIP1Q9P0W5 487 aaPredicted RBP4.9□□□□□ -1.63
VPS13A-206ENST00000376646 DCDC2BA2VCK2 349 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 SFI1A8K8P3 1242 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 EFHC2Q5JST6 749 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 CCDC102BQ68D86 513 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 C1orf229Q6ZS94 237 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-206ENST00000376646 SLC9A9Q8IVB4 645 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 PLEKHM2Q8IWE5 1019 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 ZCCHC2Q9C0B9 1178 aaKnown RBP4.89□□□□□ -1.63
VPS13A-206ENST00000376646 A0A1W2PNR3 127 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 PALM3A6NDB9 673 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-206ENST00000376646 MAP3K10Q02779 954 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 TSEN2Q8NCE0 465 aaKnown RBP4.89□□□□□ -1.63
VPS13A-206ENST00000376646 TSPAN10Q9H1Z9 355 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-206ENST00000376646 CRISPLD1Q9H336 500 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 NDFIP2Q9NV92 336 aa4.89□□□□□ -1.63
VPS13A-206ENST00000376646 MAFBQ9Y5Q3 323 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-206ENST00000376646 LZTS3O60299 673 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-206ENST00000376646 IRS1P35568 1242 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 L3MBTL2Q969R5 705 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 CALR3Q96L12 384 aaKnown RBP4.88□□□□□ -1.63
VPS13A-206ENST00000376646 ZNF777Q9ULD5 760 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-206ENST00000376646 ARID1BQ8NFD5 2236 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-206ENST00000376646 BACH1O14867 736 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 BCRP11274 1271 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 FGFR3P22607 806 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 TRIM50Q86XT4 487 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 GALNT6Q8NCL4 622 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 ZIC5Q96T25 663 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 CFHR5Q9BXR6 569 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 OXCT2Q9BYC2 517 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-206ENST00000376646 ZNF232Q9UNY5 417 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 CNTNAP5Q8WYK1 1306 aa4.88□□□□□ -1.63
VPS13A-206ENST00000376646 SHISA8B8ZZ34 492 aa4.87□□□□□ -1.63
VPS13A-206ENST00000376646 DKK1O94907 266 aa4.87□□□□□ -1.63
VPS13A-206ENST00000376646 CD33P20138 364 aa4.87□□□□□ -1.63
VPS13A-206ENST00000376646 MARSP56192 900 aaKnown RBP4.87□□□□□ -1.63
VPS13A-206ENST00000376646 NBPF1Q3BBV0 1214 aa4.87□□□□□ -1.63
VPS13A-206ENST00000376646 A6NJR5 290 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 BMP4P12644 408 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 RASA1P20936 1047 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 NOS2P35228 1153 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 GRIN2CQ14957 1233 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 CRTC2Q53ET0 693 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 BICDL1Q6ZP65 573 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 NEDD1Q8NHV4 660 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 PPP1R12CQ9BZL4 782 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 STRN4Q9NRL3 753 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 ATXN7L1Q9ULK2 861 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 KHNYNO15037 678 aaKnown RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 ATXN7O15265 892 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 MAPTP10636 758 aaKnown RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 TATP17735 454 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 ATP1A2P50993 1020 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms