RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 DDX21Q9NR30 783 aaKnown RBP eCLIP22.43■■□□□ 1.18
HLA-DQB1-201ENST00000374943 NKX1-1Q15270 411 aaPredicted RBP22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 BEND3Q5T5X7 828 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 UPF2Q9HAU5 1272 aaKnown RBP22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 PHLPP1O60346 1717 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 TOGARAM1Q9Y4F4 1720 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 IBTKQ9P2D0 1353 aaPredicted RBP22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 PI4KAP2A4QPH2 592 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 ATP8B2P98198 1209 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 SLC39A6Q13433 755 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 PI4KAP1Q8N8J0 262 aa22.42■■□□□ 1.18
HLA-DQB1-201ENST00000374943 PRAMEF22A3QJZ6 481 aa22.41■■□□□ 1.18
HLA-DQB1-201ENST00000374943 LARP1Q6PKG0 1096 aaKnown RBP22.41■■□□□ 1.18
HLA-DQB1-201ENST00000374943 TUBGCP6Q96RT7 1819 aa22.4■■□□□ 1.18
HLA-DQB1-201ENST00000374943 ANXA1P04083 346 aa22.4■■□□□ 1.18
HLA-DQB1-201ENST00000374943 UBTFL1P0CB47 393 aaPredicted RBP22.4■■□□□ 1.18
HLA-DQB1-201ENST00000374943 CABP4P57796 275 aa22.4■■□□□ 1.18
HLA-DQB1-201ENST00000374943 PROSER3Q2NL68 480 aa22.4■■□□□ 1.18
HLA-DQB1-201ENST00000374943 PDIA6Q15084 440 aa22.39■■□□□ 1.18
HLA-DQB1-201ENST00000374943 KSR2Q6VAB6 950 aa22.39■■□□□ 1.18
HLA-DQB1-201ENST00000374943 TTC5Q8N0Z6 440 aa22.39■■□□□ 1.18
HLA-DQB1-201ENST00000374943 ERVV-2B6SEH9 535 aa22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 ALDH1L1O75891 902 aa22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 EVA1CP58658 441 aa22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 PLEKHM2Q8IWE5 1019 aa22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 ZNF496Q96IT1 587 aaPredicted RBP22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 TBC1D32Q96NH3 1257 aa22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 FMNL2Q96PY5 1086 aa22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 LRRFIP2Q9Y608 721 aaKnown RBP22.39■■□□□ 1.17
HLA-DQB1-201ENST00000374943 SNRPA1P09661 255 aaKnown RBP22.38■■□□□ 1.17
HLA-DQB1-201ENST00000374943 STRN4Q9NRL3 753 aa22.38■■□□□ 1.17
HLA-DQB1-201ENST00000374943 ARFGEF2Q9Y6D5 1785 aa22.37■■□□□ 1.17
HLA-DQB1-201ENST00000374943 DDX58O95786 925 aaKnown RBP22.36■■□□□ 1.17
HLA-DQB1-201ENST00000374943 KCPQ6ZWJ8 1503 aa22.36■■□□□ 1.17
HLA-DQB1-201ENST00000374943 DISP2A7MBM2 1401 aa22.36■■□□□ 1.17
HLA-DQB1-201ENST00000374943 ITGB4P16144 1822 aa22.36■■□□□ 1.17
HLA-DQB1-201ENST00000374943 MAP3K2Q9Y2U5 619 aa22.36■■□□□ 1.17
HLA-DQB1-201ENST00000374943 NRAPQ86VF7 1730 aa22.35■■□□□ 1.17
HLA-DQB1-201ENST00000374943 PNMA6EA0A0J9YXQ4 647 aa22.35■■□□□ 1.17
HLA-DQB1-201ENST00000374943 SSH3Q8TE77 659 aa22.35■■□□□ 1.17
HLA-DQB1-201ENST00000374943 RGS17Q9UGC6 210 aaPredicted RBP22.35■■□□□ 1.17
HLA-DQB1-201ENST00000374943 AFDNP55196 1824 aaKnown RBP22.35■■□□□ 1.17
HLA-DQB1-201ENST00000374943 TNS2Q63HR2 1409 aa22.35■■□□□ 1.17
HLA-DQB1-201ENST00000374943 LRP6O75581 1613 aa22.34■■□□□ 1.17
HLA-DQB1-201ENST00000374943 TTC22Q5TAA0 569 aa22.33■■□□□ 1.17
HLA-DQB1-201ENST00000374943 BTG4Q9NY30 223 aa22.33■■□□□ 1.17
HLA-DQB1-201ENST00000374943 POLA2Q14181 598 aa22.33■■□□□ 1.16
HLA-DQB1-201ENST00000374943 ERBB4Q15303 1308 aa22.33■■□□□ 1.16
HLA-DQB1-201ENST00000374943 LRP10Q7Z4F1 713 aa22.32■■□□□ 1.16
HLA-DQB1-201ENST00000374943 LINS1Q8NG48 757 aa22.32■■□□□ 1.16
HLA-DQB1-201ENST00000374943 NBPF7P0C2Y1 421 aaPredicted RBP22.31■■□□□ 1.16
HLA-DQB1-201ENST00000374943 GSPT1P15170 499 aaKnown RBP22.31■■□□□ 1.16
HLA-DQB1-201ENST00000374943 OSBPL3Q9H4L5 887 aa22.31■■□□□ 1.16
HLA-DQB1-201ENST00000374943 HDAC5Q9UQL6 1122 aa22.31■■□□□ 1.16
HLA-DQB1-201ENST00000374943 NUP188Q5SRE5 1749 aa22.31■■□□□ 1.16
HLA-DQB1-201ENST00000374943 UTYO14607 1347 aa22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 SMARCA5O60264 1052 aaPredicted RBP22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 C16orf71Q8IYS4 520 aaPredicted RBP22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 NWD2Q9ULI1 1742 aa22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 MTX1Q13505 466 aa22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 LRRCC1Q9C099 1032 aa22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 EXOC6BQ9Y2D4 811 aa22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 USP16Q9Y5T5 823 aa22.3■■□□□ 1.16
HLA-DQB1-201ENST00000374943 SALL3Q9BXA9 1300 aa22.29■■□□□ 1.16
HLA-DQB1-201ENST00000374943 MFAP1P55081 439 aaKnown RBP22.29■■□□□ 1.16
HLA-DQB1-201ENST00000374943 EIF5BO60841 1220 aaKnown RBP22.28■■□□□ 1.16
HLA-DQB1-201ENST00000374943 CDC45O75419 566 aa22.28■■□□□ 1.16
HLA-DQB1-201ENST00000374943 PPP1R42Q7Z4L9 355 aa22.28■■□□□ 1.16
HLA-DQB1-201ENST00000374943 OTUD7AQ8TE49 926 aaPredicted RBP22.28■■□□□ 1.16
HLA-DQB1-201ENST00000374943 C22orf23Q9BZE7 217 aa22.28■■□□□ 1.16
HLA-DQB1-201ENST00000374943 RAB11FIP3O75154 756 aa22.27■■□□□ 1.16
HLA-DQB1-201ENST00000374943 XAGE3Q8WTP9 111 aa22.27■■□□□ 1.16
HLA-DQB1-201ENST00000374943 APBB1O00213 710 aa22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 TBC1D9Q6ZT07 1266 aa22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 DDX54Q8TDD1 881 aaKnown RBP22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 MYL6BP14649 208 aa22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 RIC3Q7Z5B4 369 aa22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 C9orf78Q9NZ63 289 aaPredicted RBP22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 DAXXQ9UER7 740 aaPredicted RBP22.26■■□□□ 1.15
HLA-DQB1-201ENST00000374943 AIMP1Q12904 312 aaKnown RBP22.25■■□□□ 1.15
HLA-DQB1-201ENST00000374943 COPS6Q7L5N1 327 aa22.25■■□□□ 1.15
HLA-DQB1-201ENST00000374943 METTL22Q9BUU2 404 aaPredicted RBP22.25■■□□□ 1.15
HLA-DQB1-201ENST00000374943 AK9Q5TCS8 1911 aa22.24■■□□□ 1.15
HLA-DQB1-201ENST00000374943 GRM8O00222 908 aa22.24■■□□□ 1.15
HLA-DQB1-201ENST00000374943 SRGAP3O43295 1099 aa22.24■■□□□ 1.15
HLA-DQB1-201ENST00000374943 RBM25P49756 843 aaKnown RBP22.24■■□□□ 1.15
HLA-DQB1-201ENST00000374943 PDE1AP54750 535 aa22.24■■□□□ 1.15
HLA-DQB1-201ENST00000374943 CWF19L2Q2TBE0 894 aaKnown RBP22.24■■□□□ 1.15
HLA-DQB1-201ENST00000374943 IGKV5-2P06315 115 aa22.23■■□□□ 1.15
HLA-DQB1-201ENST00000374943 NEXNQ0ZGT2 675 aa22.23■■□□□ 1.15
HLA-DQB1-201ENST00000374943 BECN1Q14457 450 aa22.23■■□□□ 1.15
HLA-DQB1-201ENST00000374943 AOX1Q06278 1338 aa22.22■■□□□ 1.15
HLA-DQB1-201ENST00000374943 HSP90AB4PQ58FF6 505 aa22.22■■□□□ 1.15
HLA-DQB1-201ENST00000374943 ANKRD13DQ6ZTN6 518 aa22.22■■□□□ 1.15
HLA-DQB1-201ENST00000374943 USP35Q9P2H5 1018 aa22.22■■□□□ 1.15
HLA-DQB1-201ENST00000374943 STAP2Q9UGK3 403 aa22.22■■□□□ 1.15
HLA-DQB1-201ENST00000374943 NEURL1BA8MQ27 555 aa22.21■■□□□ 1.15
HLA-DQB1-201ENST00000374943 TMOD3Q9NYL9 352 aa22.21■■□□□ 1.15
HLA-DQB1-201ENST00000374943 DOT1LQ8TEK3 1739 aa22.21■■□□□ 1.15
HLA-DQB1-201ENST00000374943 COL15A1P39059 1388 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms