RNA–Protein interactions for RNA: ENST00000368530.6

TPM3-210, Transcript of tropomyosin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TPM3, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-210ENST00000368530 SULT6B1Q6IMI4 303 aa13.29□□□□□ -0.28
TPM3-210ENST00000368530 INTS5Q6P9B9 1019 aaKnown RBP13.29□□□□□ -0.28
TPM3-210ENST00000368530 MORC1Q86VD1 984 aa13.29□□□□□ -0.28
TPM3-210ENST00000368530 CCDC87Q9NVE4 849 aa13.29□□□□□ -0.28
TPM3-210ENST00000368530 SRP68Q9UHB9 627 aaKnown RBP13.29□□□□□ -0.28
TPM3-210ENST00000368530 DDR1Q08345 913 aa13.28□□□□□ -0.28
TPM3-210ENST00000368530 FKBP8Q14318 412 aa13.28□□□□□ -0.28
TPM3-210ENST00000368530 PARP3Q9Y6F1 533 aa13.28□□□□□ -0.28
TPM3-210ENST00000368530 TM4SF1P30408 202 aa13.27□□□□□ -0.29
TPM3-210ENST00000368530 AMER1Q5JTC6 1135 aaPredicted RBP13.27□□□□□ -0.29
TPM3-210ENST00000368530 ARHGAP27Q6ZUM4 889 aa13.27□□□□□ -0.29
TPM3-210ENST00000368530 GTF3C3Q9Y5Q9 886 aa13.27□□□□□ -0.29
TPM3-210ENST00000368530 USP42Q9H9J4 1324 aaKnown RBP13.27□□□□□ -0.29
TPM3-210ENST00000368530 FCHSD2O94868 740 aa13.26□□□□□ -0.29
TPM3-210ENST00000368530 C1orf141Q5JVX7 400 aa13.26□□□□□ -0.29
TPM3-210ENST00000368530 DNAJC5GQ8N7S2 189 aa13.26□□□□□ -0.29
TPM3-210ENST00000368530 LGR6Q9HBX8 967 aa13.26□□□□□ -0.29
TPM3-210ENST00000368530 ADAMTS7Q9UKP4 1686 aa13.26□□□□□ -0.29
TPM3-210ENST00000368530 BRCA1P38398 1863 aaKnown RBP13.25□□□□□ -0.29
TPM3-210ENST00000368530 TOMM70O94826 608 aa13.25□□□□□ -0.29
TPM3-210ENST00000368530 NMRK2Q9NPI5 230 aa13.25□□□□□ -0.29
TPM3-210ENST00000368530 TJP1Q07157 1748 aa13.24□□□□□ -0.29
TPM3-210ENST00000368530 POLRMTO00411 1230 aaKnown RBP13.23□□□□□ -0.29
TPM3-210ENST00000368530 AKAP4Q5JQC9 854 aa13.23□□□□□ -0.29
TPM3-210ENST00000368530 C9orf131Q5VYM1 1079 aa13.23□□□□□ -0.29
TPM3-210ENST00000368530 DNAJC10Q8IXB1 793 aa13.23□□□□□ -0.29
TPM3-210ENST00000368530 SLC52A2Q9HAB3 445 aa13.23□□□□□ -0.29
TPM3-210ENST00000368530 PIM2Q9P1W9 311 aa13.23□□□□□ -0.29
TPM3-210ENST00000368530 CYP19A1P11511 503 aaPredicted RBP13.23□□□□□ -0.29
TPM3-210ENST00000368530 CHRNA5P30532 468 aa13.23□□□□□ -0.29
TPM3-210ENST00000368530 PNISRQ8TF01 805 aaKnown RBP13.23□□□□□ -0.29
TPM3-210ENST00000368530 RNMTO43148 476 aaKnown RBP13.22□□□□□ -0.29
TPM3-210ENST00000368530 SOS1Q07889 1333 aaPredicted RBP13.22□□□□□ -0.29
TPM3-210ENST00000368530 SLC39A6Q13433 755 aa13.22□□□□□ -0.29
TPM3-210ENST00000368530 SCN11AQ9UI33 1791 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 MRC1P22897 1456 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 ABCB7O75027 752 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 PPP2R1AP30153 589 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 APLP1P51693 650 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 DALRD3Q5D0E6 543 aaKnown RBP13.21□□□□□ -0.29
TPM3-210ENST00000368530 USPL1Q5W0Q7 1092 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 BCL2L12Q9HB09 334 aa13.21□□□□□ -0.29
TPM3-210ENST00000368530 NPC1L1Q9UHC9 1359 aa13.2□□□□□ -0.3
TPM3-210ENST00000368530 MTHFSDQ2M296 383 aaKnown RBP13.2□□□□□ -0.3
TPM3-210ENST00000368530 ARFGEF1Q9Y6D6 1849 aa13.2□□□□□ -0.3
TPM3-210ENST00000368530 KCPQ6ZWJ8 1503 aa13.2□□□□□ -0.3
TPM3-210ENST00000368530 HMOX1P09601 288 aa13.19□□□□□ -0.3
TPM3-210ENST00000368530 NFIXQ14938 502 aa13.19□□□□□ -0.3
TPM3-210ENST00000368530 NARFQ9UHQ1 456 aa13.19□□□□□ -0.3
TPM3-210ENST00000368530 PRELPP51888 382 aa13.18□□□□□ -0.3
TPM3-210ENST00000368530 POLA2Q14181 598 aa13.18□□□□□ -0.3
TPM3-210ENST00000368530 RBM46Q8TBY0 533 aaKnown RBP13.18□□□□□ -0.3
TPM3-210ENST00000368530 ZBTB1Q9Y2K1 713 aa13.18□□□□□ -0.3
TPM3-210ENST00000368530 ZPR1O75312 459 aa13.18□□□□□ -0.3
TPM3-210ENST00000368530 VSIG10Q8N0Z9 540 aa13.17□□□□□ -0.3
TPM3-210ENST00000368530 RNF181Q9P0P0 153 aa13.17□□□□□ -0.3
TPM3-210ENST00000368530 COL15A1P39059 1388 aa13.16□□□□□ -0.3
TPM3-210ENST00000368530 RRAGCQ9HB90 399 aa13.16□□□□□ -0.3
TPM3-210ENST00000368530 NRXN2Q9P2S2 1712 aa13.16□□□□□ -0.3
TPM3-210ENST00000368530 DIAPH1O60610 1272 aaKnown RBP13.15□□□□□ -0.3
TPM3-210ENST00000368530 SERPINB2P05120 415 aa13.15□□□□□ -0.3
TPM3-210ENST00000368530 DSG3P32926 999 aa13.15□□□□□ -0.3
TPM3-210ENST00000368530 EIF5P55010 431 aaKnown RBP13.15□□□□□ -0.3
TPM3-210ENST00000368530 HTRA3P83110 453 aa13.15□□□□□ -0.3
TPM3-210ENST00000368530 ZBED9Q6R2W3 1325 aa13.15□□□□□ -0.31
TPM3-210ENST00000368530 RASSF7Q02833 373 aa13.14□□□□□ -0.31
TPM3-210ENST00000368530 FSTL1Q12841 308 aa13.14□□□□□ -0.31
TPM3-210ENST00000368530 IL17REQ8NFR9 667 aa13.14□□□□□ -0.31
TPM3-210ENST00000368530 KDM2BQ8NHM5 1336 aa13.14□□□□□ -0.31
TPM3-210ENST00000368530 SBF1O95248 1867 aa13.13□□□□□ -0.31
TPM3-210ENST00000368530 CARMIL3Q8ND23 1372 aa13.13□□□□□ -0.31
TPM3-210ENST00000368530 COL3A1P02461 1466 aaPredicted RBP13.13□□□□□ -0.31
TPM3-210ENST00000368530 AFDNP55196 1824 aaKnown RBP13.13□□□□□ -0.31
TPM3-210ENST00000368530 JMYQ8N9B5 988 aa13.13□□□□□ -0.31
TPM3-210ENST00000368530 ZNF496Q96IT1 587 aaPredicted RBP13.13□□□□□ -0.31
TPM3-210ENST00000368530 UBR2Q8IWV8 1755 aa13.12□□□□□ -0.31
TPM3-210ENST00000368530 NFKBIEO00221 500 aa13.12□□□□□ -0.31
TPM3-210ENST00000368530 CANXP27824 592 aaKnown RBP13.12□□□□□ -0.31
TPM3-210ENST00000368530 TTLL6Q8N841 843 aa13.12□□□□□ -0.31
TPM3-210ENST00000368530 KLRG1Q96E93 195 aa13.12□□□□□ -0.31
TPM3-210ENST00000368530 ZC3H4Q9UPT8 1303 aaKnown RBP13.11□□□□□ -0.31
TPM3-210ENST00000368530 LMNB1P20700 586 aa13.11□□□□□ -0.31
TPM3-210ENST00000368530 WDR43Q15061 677 aaKnown RBP eCLIP13.11□□□□□ -0.31
TPM3-210ENST00000368530 ZNF790Q6PG37 636 aa13.11□□□□□ -0.31
TPM3-210ENST00000368530 C16orf71Q8IYS4 520 aaPredicted RBP13.11□□□□□ -0.31
TPM3-210ENST00000368530 WDR90Q96KV7 1748 aa13.11□□□□□ -0.31
TPM3-210ENST00000368530 HEG1Q9ULI3 1381 aa13.1□□□□□ -0.31
TPM3-210ENST00000368530 GLTPD2A6NH11 291 aa13.1□□□□□ -0.31
TPM3-210ENST00000368530 POTECB2RU33 542 aa13.1□□□□□ -0.31
TPM3-210ENST00000368530 STARD3NLO95772 234 aa13.1□□□□□ -0.31
TPM3-210ENST00000368530 TBC1D9BQ66K14 1250 aa13.1□□□□□ -0.31
TPM3-210ENST00000368530 C2CD5Q86YS7 1000 aa13.1□□□□□ -0.31
TPM3-210ENST00000368530 SALL2Q9Y467 1007 aaPredicted RBP13.1□□□□□ -0.31
TPM3-210ENST00000368530 H0YIN7 160 aa13.09□□□□□ -0.31
TPM3-210ENST00000368530 BICDL1Q6ZP65 573 aa13.09□□□□□ -0.31
TPM3-210ENST00000368530 VIRMAQ69YN4 1812 aaKnown RBP13.09□□□□□ -0.31
TPM3-210ENST00000368530 CEMIPQ8WUJ3 1361 aa13.09□□□□□ -0.31
TPM3-210ENST00000368530 DLEC1Q9Y238 1755 aa13.09□□□□□ -0.31
TPM3-210ENST00000368530 GNAT3A8MTJ3 354 aa13.08□□□□□ -0.31
TPM3-210ENST00000368530 PHACTR3Q96KR7 559 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms