RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 F6X3S4 739 aa22.77■■□□□ 1.24
CCDC88B-202ENST00000356786 GJB2P29033 226 aa22.77■■□□□ 1.24
CCDC88B-202ENST00000356786 LMAN1P49257 510 aa22.77■■□□□ 1.24
CCDC88B-202ENST00000356786 CTDP1Q9Y5B0 961 aaPredicted RBP22.77■■□□□ 1.24
CCDC88B-202ENST00000356786 FSIP1Q8NA03 581 aa22.77■■□□□ 1.24
CCDC88B-202ENST00000356786 BOLA2Q9H3K6 86 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 TMX1Q9H3N1 280 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 CFAP43Q8NDM7 1665 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 FAM177BA6PVY3 158 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 HDAC1Q13547 482 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 SYCP1Q15431 976 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 SPG7Q9UQ90 795 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 MYL6BP14649 208 aa22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 EIF4G3O43432 1585 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-202ENST00000356786 CCDC186Q7Z3E2 898 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 RBM42Q9BTD8 480 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 BIN1O00499 593 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 ENOX2Q16206 610 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 SNX21Q969T3 373 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 TTC22Q5TAA0 569 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 CEP126Q9P2H0 1117 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 ATAD2Q6PL18 1390 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 SLC3A2P08195 630 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 RBM33Q96EV2 1170 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 ZHX3Q9H4I2 956 aa22.75■■□□□ 1.23
CCDC88B-202ENST00000356786 HS1BP3Q53T59 392 aa22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 C8orf76Q96K31 380 aa22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 U3KPZ7 1027 aaPredicted RBP22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 NUCB1Q02818 461 aa22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 STX1AQ16623 288 aa22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 SMARCC1Q92922 1105 aaPredicted RBP22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 CPLX3Q8WVH0 158 aa22.74■■□□□ 1.23
CCDC88B-202ENST00000356786 CAVIN2O95810 425 aa22.73■■□□□ 1.23
CCDC88B-202ENST00000356786 RAI14Q9P0K7 980 aa22.73■■□□□ 1.23
CCDC88B-202ENST00000356786 IMMTQ16891 758 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 IPO4Q8TEX9 1081 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 TAF4BQ92750 862 aa22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 PLCH2O75038 1416 aa22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 ADGRF5Q8IZF2 1346 aa22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 IGSF3O75054 1194 aa22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 BBXQ8WY36 941 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 TCOF1Q13428 1488 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 ZSWIM4Q9H7M6 989 aa22.72■■□□□ 1.23
CCDC88B-202ENST00000356786 ZSCAN25Q6NSZ9 544 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 CCDC94Q9BW85 323 aaPredicted RBP22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 SEC24BO95487 1268 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 WASF1Q92558 559 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 UBAC1Q9BSL1 405 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 RAB3GAP1Q15042 981 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 CCDC57Q2TAC2 916 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 TSHZ3Q63HK5 1081 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 MCM3P25205 808 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 FAM107BQ9H098 131 aa22.71■■□□□ 1.23
CCDC88B-202ENST00000356786 GNG11P61952 73 aa22.7■■□□□ 1.23
CCDC88B-202ENST00000356786 SEPT7Q16181 437 aaKnown RBP22.7■■□□□ 1.23
CCDC88B-202ENST00000356786 THEMISQ8N1K5 641 aaPredicted RBP22.7■■□□□ 1.23
CCDC88B-202ENST00000356786 SKILP12757 684 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 GPATCH11Q8N954 259 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 CCDC171Q6TFL3 1326 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 ZSCAN22P10073 491 aaPredicted RBP22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 IKQ13123 557 aaPredicted RBP22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 SPA17Q15506 151 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 USP48Q86UV5 1035 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 FAM200AQ8TCP9 573 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 SLC26A8Q96RN1 970 aa22.7■■□□□ 1.22
CCDC88B-202ENST00000356786 ITSN2Q9NZM3 1697 aa22.69■■□□□ 1.22
CCDC88B-202ENST00000356786 SMC5Q8IY18 1101 aa22.69■■□□□ 1.22
CCDC88B-202ENST00000356786 ZFP91Q96JP5 570 aaPredicted RBP22.69■■□□□ 1.22
CCDC88B-202ENST00000356786 ABCA5Q8WWZ7 1642 aa22.69■■□□□ 1.22
CCDC88B-202ENST00000356786 SDSP20132 328 aa22.69■■□□□ 1.22
CCDC88B-202ENST00000356786 GTPBP4Q9BZE4 634 aaKnown RBP22.69■■□□□ 1.22
CCDC88B-202ENST00000356786 CNPY2Q9Y2B0 182 aa22.68■■□□□ 1.22
CCDC88B-202ENST00000356786 CEP131Q9UPN4 1083 aa22.68■■□□□ 1.22
CCDC88B-202ENST00000356786 SSBP05455 408 aaKnown RBP eCLIP22.68■■□□□ 1.22
CCDC88B-202ENST00000356786 ZNF397Q8NF99 534 aaPredicted RBP22.68■■□□□ 1.22
CCDC88B-202ENST00000356786 TDO2P48775 406 aa22.68■■□□□ 1.22
CCDC88B-202ENST00000356786 RTEL1-TNFRSF6BF6WH68 1400 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 RNF187Q5TA31 235 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 CNNM3Q8NE01 707 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 CCDC8Q9H0W5 538 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 V9GYY5 206 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 DISP1Q96F81 1524 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 ZRSR2Q15696 482 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 POTEB2H3BUK9 544 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 IDI1Q13907 227 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 GOLGA6L9A6NEM1 432 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 CCT2P78371 535 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 KIF6Q6ZMV9 814 aa22.67■■□□□ 1.22
CCDC88B-202ENST00000356786 SYCP2Q9BX26 1530 aa22.66■■□□□ 1.22
CCDC88B-202ENST00000356786 BTBD11A6QL63 1104 aa22.66■■□□□ 1.22
CCDC88B-202ENST00000356786 ANKRD62A6NC57 917 aa22.66■■□□□ 1.22
CCDC88B-202ENST00000356786 IDH1O75874 414 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-202ENST00000356786 DENND4BO75064 1496 aaPredicted RBP22.66■■□□□ 1.22
CCDC88B-202ENST00000356786 CCDC150Q8NCX0 1101 aa22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 INCENPQ9NQS7 918 aa22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 HMGB1P09429 215 aaKnown RBP22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 TAF7Q15545 349 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 ANO6Q4KMQ2 910 aa22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 NUP160Q12769 1436 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms