RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 SHPRHQ149N8 1683 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 GSPT1P15170 499 aaKnown RBP18.75■□□□□ 0.59
RTN3-205ENST00000356000 LRMPQ12912 555 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 CCDC186Q7Z3E2 898 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 GPATCH11Q8N954 259 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 DONSONQ9NYP3 566 aa18.75■□□□□ 0.59
RTN3-205ENST00000356000 U2SURPO15042 1029 aaKnown RBP18.74■□□□□ 0.59
RTN3-205ENST00000356000 PNMA6AP0CW24 399 aaPredicted RBP18.74■□□□□ 0.59
RTN3-205ENST00000356000 CUL4AQ13619 759 aa18.74■□□□□ 0.59
RTN3-205ENST00000356000 TMX3Q96JJ7 454 aa18.74■□□□□ 0.59
RTN3-205ENST00000356000 ATP2B1P20020 1258 aa18.73■□□□□ 0.59
RTN3-205ENST00000356000 SSH1Q8WYL5 1049 aa18.73■□□□□ 0.59
RTN3-205ENST00000356000 RGL3Q3MIN7 710 aa18.73■□□□□ 0.59
RTN3-205ENST00000356000 GRIPAP1Q4V328 841 aa18.73■□□□□ 0.59
RTN3-205ENST00000356000 NOB1Q9ULX3 412 aaKnown RBP18.73■□□□□ 0.59
RTN3-205ENST00000356000 RRP15Q9Y3B9 282 aaKnown RBP18.73■□□□□ 0.59
RTN3-205ENST00000356000 PPIP5K1Q6PFW1 1433 aa18.73■□□□□ 0.59
RTN3-205ENST00000356000 ZSCAN25Q6NSZ9 544 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 EGFL6Q8IUX8 553 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 ZNF592Q92610 1267 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 NOS1P29475 1434 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 SLU7O95391 586 aaKnown RBP18.72■□□□□ 0.59
RTN3-205ENST00000356000 SATB1Q01826 763 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 GPS2Q13227 327 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 DRC1Q96MC2 740 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 EID1Q9Y6B2 187 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 PLEKHG2Q9H7P9 1386 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 NWD1Q149M9 1564 aa18.72■□□□□ 0.59
RTN3-205ENST00000356000 FBXO18Q8NFZ0 1043 aa18.71■□□□□ 0.59
RTN3-205ENST00000356000 SMARCE1Q969G3 411 aa18.71■□□□□ 0.59
RTN3-205ENST00000356000 EFCAB6Q5THR3 1501 aa18.71■□□□□ 0.59
RTN3-205ENST00000356000 INTS3Q68E01 1043 aaKnown RBP18.71■□□□□ 0.59
RTN3-205ENST00000356000 INTS4Q96HW7 963 aaKnown RBP18.71■□□□□ 0.59
RTN3-205ENST00000356000 ST5P78524 1137 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 TTC31Q49AM3 519 aaPredicted RBP18.7■□□□□ 0.58
RTN3-205ENST00000356000 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.7■□□□□ 0.58
RTN3-205ENST00000356000 GOLGA5Q8TBA6 731 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 CNKSR2Q8WXI2 1034 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 CCDC171Q6TFL3 1326 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 ADGRB3O60242 1522 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 ALKQ9UM73 1620 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 CLCN6P51797 869 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 GSCP56915 257 aaPredicted RBP18.7■□□□□ 0.58
RTN3-205ENST00000356000 ILDR2Q71H61 639 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 HSP90B1P14625 803 aaKnown RBP18.7■□□□□ 0.58
RTN3-205ENST00000356000 MCM2P49736 904 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 NOM1Q5C9Z4 860 aaKnown RBP18.7■□□□□ 0.58
RTN3-205ENST00000356000 NYAP1Q6ZVC0 841 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 IQUBQ8NA54 791 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 UBXN6Q9BZV1 441 aa18.7■□□□□ 0.58
RTN3-205ENST00000356000 KIF1CO43896 1103 aaKnown RBP18.69■□□□□ 0.58
RTN3-205ENST00000356000 UBE2HP62256 183 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 PACS2Q86VP3 889 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 PIK3C2BO00750 1634 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 TCHHQ07283 1943 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 ZRANB2O95218 330 aaKnown RBP eCLIP18.69■□□□□ 0.58
RTN3-205ENST00000356000 GIMAP6Q6P9H5 292 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 DEF6Q9H4E7 631 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 CXorf56Q9H5V9 222 aa18.69■□□□□ 0.58
RTN3-205ENST00000356000 POLR3GO15318 223 aaPredicted RBP18.68■□□□□ 0.58
RTN3-205ENST00000356000 HAP1P54257 671 aaPredicted RBP18.68■□□□□ 0.58
RTN3-205ENST00000356000 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.68■□□□□ 0.58
RTN3-205ENST00000356000 STRCP1A6NGW2 1772 aa18.68■□□□□ 0.58
RTN3-205ENST00000356000 MAGEA9P43362 315 aa18.68■□□□□ 0.58
RTN3-205ENST00000356000 SWT1Q5T5J6 900 aaKnown RBP18.68■□□□□ 0.58
RTN3-205ENST00000356000 CCDC91Q7Z6B0 441 aa18.68■□□□□ 0.58
RTN3-205ENST00000356000 RPAP1Q9BWH6 1393 aaPredicted RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 TMEM2Q9UHN6 1383 aa18.67■□□□□ 0.58
RTN3-205ENST00000356000 PTPN14Q15678 1187 aa18.67■□□□□ 0.58
RTN3-205ENST00000356000 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 NRBP1Q9UHY1 535 aa18.67■□□□□ 0.58
RTN3-205ENST00000356000 WDR33Q9C0J8 1336 aaKnown RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 IPO8O15397 1037 aaKnown RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 EXOSC9Q06265 439 aaKnown RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 FOXD4L6Q3SYB3 417 aaPredicted RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 FOXD4L3Q6VB84 417 aaPredicted RBP18.67■□□□□ 0.58
RTN3-205ENST00000356000 PLEKHM2Q8IWE5 1019 aa18.67■□□□□ 0.58
RTN3-205ENST00000356000 EXOC6BQ9Y2D4 811 aa18.67■□□□□ 0.58
RTN3-205ENST00000356000 SART3Q15020 963 aaKnown RBP18.66■□□□□ 0.58
RTN3-205ENST00000356000 TTC22Q5TAA0 569 aa18.66■□□□□ 0.58
RTN3-205ENST00000356000 SUGP1Q8IWZ8 645 aaKnown RBP18.66■□□□□ 0.58
RTN3-205ENST00000356000 ATAD2Q6PL18 1390 aa18.66■□□□□ 0.58
RTN3-205ENST00000356000 FAM200AQ8TCP9 573 aa18.66■□□□□ 0.58
RTN3-205ENST00000356000 MED4Q9NPJ6 270 aa18.66■□□□□ 0.58
RTN3-205ENST00000356000 TET3O43151 1660 aa18.65■□□□□ 0.58
RTN3-205ENST00000356000 FAM135BQ49AJ0 1406 aa18.65■□□□□ 0.58
RTN3-205ENST00000356000 CACTINQ8WUQ7 758 aaKnown RBP18.65■□□□□ 0.58
RTN3-205ENST00000356000 DIP2AQ14689 1571 aa18.65■□□□□ 0.58
RTN3-205ENST00000356000 HDGFP51858 240 aaKnown RBP18.65■□□□□ 0.58
RTN3-205ENST00000356000 CCDC192P0DO97 292 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 MNS1Q8NEH6 495 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 TSR2Q969E8 191 aaKnown RBP18.64■□□□□ 0.57
RTN3-205ENST00000356000 PSD3Q9NYI0 1048 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 NEK4P51957 841 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 ERCC6LQ2NKX8 1250 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 PLA2G4DQ86XP0 818 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 DRC7Q8IY82 874 aa18.64■□□□□ 0.57
RTN3-205ENST00000356000 AATKQ6ZMQ8 1374 aa18.63■□□□□ 0.57
RTN3-205ENST00000356000 ATP8B1O43520 1251 aa18.63■□□□□ 0.57
RTN3-205ENST00000356000 ABCC11Q96J66 1382 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms