RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 RPAP1Q9BWH6 1393 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-202ENST00000347037 CRB1P82279 1406 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 SYT1P21579 422 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 UBE2HP62256 183 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 PRIMPOLQ96LW4 560 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 SPG7Q9UQ90 795 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 METP08581 1390 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 MAP3K19Q56UN5 1328 aa13.32□□□□□ -0.28
SYNE1-202ENST00000347037 CWC27Q6UX04 472 aaKnown RBP13.31□□□□□ -0.28
SYNE1-202ENST00000347037 SMAP1Q8IYB5 467 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-202ENST00000347037 TTC21BQ7Z4L5 1316 aa13.31□□□□□ -0.28
SYNE1-202ENST00000347037 CCDC30Q5VVM6 783 aa13.31□□□□□ -0.28
SYNE1-202ENST00000347037 PRR36Q9H6K5 1346 aa13.31□□□□□ -0.28
SYNE1-202ENST00000347037 KDM4AO75164 1064 aa13.31□□□□□ -0.28
SYNE1-202ENST00000347037 LETM1O95202 739 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-202ENST00000347037 DDX54Q8TDD1 881 aaKnown RBP13.31□□□□□ -0.28
SYNE1-202ENST00000347037 KIF3AQ9Y496 699 aa13.31□□□□□ -0.28
SYNE1-202ENST00000347037 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-202ENST00000347037 SNX14Q9Y5W7 946 aa13.31□□□□□ -0.28
SYNE1-202ENST00000347037 ZNF142P52746 1687 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-202ENST00000347037 VPS37CA5D8V6 355 aaPredicted RBP13.3□□□□□ -0.28
SYNE1-202ENST00000347037 CCDC83Q8IWF9 413 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 TCHHQ07283 1943 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 SSH2Q76I76 1423 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 CASTP20810 708 aaKnown RBP13.3□□□□□ -0.28
SYNE1-202ENST00000347037 RASEFQ8IZ41 740 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 STAP2Q9UGK3 403 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 DLC1Q96QB1 1528 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 F13A1P00488 732 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 DNM1Q05193 864 aaKnown RBP13.3□□□□□ -0.28
SYNE1-202ENST00000347037 ZNF710Q8N1W2 664 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 LIMCH1Q9UPQ0 1083 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 ACEP12821 1306 aa13.3□□□□□ -0.28
SYNE1-202ENST00000347037 PPP4R3BQ5MIZ7 849 aa13.29□□□□□ -0.28
SYNE1-202ENST00000347037 RUFY3Q7L099 469 aa13.29□□□□□ -0.28
SYNE1-202ENST00000347037 ATP6V1DQ9Y5K8 247 aa13.29□□□□□ -0.28
SYNE1-202ENST00000347037 CHAF1AQ13111 956 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-202ENST00000347037 OS9Q13438 667 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-202ENST00000347037 PPP1R42Q7Z4L9 355 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 SLIT1O75093 1534 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 LARGE1O95461 756 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 GJB2P29033 226 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 AMPHP49418 695 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 TMEM87AQ8NBN3 555 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 RAD50Q92878 1312 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 SGSM2O43147 1006 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 CNTROBQ8N137 903 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 USP44Q9H0E7 712 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 SOS1Q07889 1333 aaPredicted RBP13.28□□□□□ -0.28
SYNE1-202ENST00000347037 ARHGAP23Q9P227 1491 aa13.28□□□□□ -0.28
SYNE1-202ENST00000347037 SRGAP3O43295 1099 aa13.27□□□□□ -0.28
SYNE1-202ENST00000347037 PYCARDQ9ULZ3 195 aa13.27□□□□□ -0.28
SYNE1-202ENST00000347037 RHPN1Q8TCX5 695 aa13.27□□□□□ -0.29
SYNE1-202ENST00000347037 SPDYE4A6NLX3 237 aa13.27□□□□□ -0.29
SYNE1-202ENST00000347037 EIF2S2P20042 333 aaKnown RBP13.27□□□□□ -0.29
SYNE1-202ENST00000347037 CAMK4Q16566 473 aa13.27□□□□□ -0.29
SYNE1-202ENST00000347037 JAKMIP1Q96N16 626 aaKnown RBP13.27□□□□□ -0.29
SYNE1-202ENST00000347037 BCL2L12Q9HB09 334 aa13.27□□□□□ -0.29
SYNE1-202ENST00000347037 RIMS1Q86UR5 1692 aaKnown RBP13.27□□□□□ -0.29
SYNE1-202ENST00000347037 DIAPH3Q9NSV4 1193 aa13.26□□□□□ -0.29
SYNE1-202ENST00000347037 AP5Z1O43299 807 aa13.26□□□□□ -0.29
SYNE1-202ENST00000347037 FERMT3Q86UX7 667 aa13.26□□□□□ -0.29
SYNE1-202ENST00000347037 TTC14Q96N46 770 aa13.26□□□□□ -0.29
SYNE1-202ENST00000347037 PHAXQ9H814 394 aaKnown RBP13.26□□□□□ -0.29
SYNE1-202ENST00000347037 DRC7Q8IY82 874 aa13.26□□□□□ -0.29
SYNE1-202ENST00000347037 LTV1Q96GA3 475 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-202ENST00000347037 LSG1Q9H089 658 aaKnown RBP13.26□□□□□ -0.29
SYNE1-202ENST00000347037 PRPF40BQ6NWY9 871 aaKnown RBP13.25□□□□□ -0.29
SYNE1-202ENST00000347037 NECAB1Q8N987 351 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 PDRG1Q9NUG6 133 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 PLEKHG5O94827 1062 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 KCNJ4P48050 445 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 PI4K2BQ8TCG2 481 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 GOLGA6L6A8MZA4 724 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 RIOK3O14730 519 aaKnown RBP13.25□□□□□ -0.29
SYNE1-202ENST00000347037 CCDC192P0DO97 292 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 HDGFL1Q5TGJ6 251 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 PDCL2Q8N4E4 241 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 EYA1Q99502 592 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 KCNF1Q9H3M0 494 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 SPTLC3Q9NUV7 552 aa13.25□□□□□ -0.29
SYNE1-202ENST00000347037 AOX1Q06278 1338 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 ATP2B3Q16720 1220 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 BCL11BQ9C0K0 894 aaPredicted RBP13.24□□□□□ -0.29
SYNE1-202ENST00000347037 RAB11FIP3O75154 756 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 ADCK5Q3MIX3 580 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 FAM173BQ6P4H8 233 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 SSH3Q8TE77 659 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 KIF1BPQ96EK5 621 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 MTMR6Q9Y217 621 aa13.24□□□□□ -0.29
SYNE1-202ENST00000347037 GNAT3A8MTJ3 354 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 KIAA1524Q8TCG1 905 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 PTGS1P23219 599 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 GTF2F1P35269 517 aaKnown RBP eCLIP13.23□□□□□ -0.29
SYNE1-202ENST00000347037 CKAP2LQ8IYA6 745 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 HYPKQ9NX55 129 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 TNRQ92752 1358 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 PTH1RQ03431 593 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 NUTM2GQ5VZR2 741 aa13.23□□□□□ -0.29
SYNE1-202ENST00000347037 CYP46A1Q9Y6A2 500 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms