RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 CCAR1Q8IX12 1150 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 DAAM1Q9Y4D1 1078 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 BRD4O60885 1362 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CDKL5O76039 1030 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 MPNDQ8N594 471 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC171Q6TFL3 1326 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 GSDMDP57764 484 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 DRP2Q13474 957 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC80Q76M96 950 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 TRIM6Q9C030 488 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 VEZTQ9HBM0 779 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 ATXN2Q99700 1313 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CTIFO43310 598 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 TSPY26PQ9H489 355 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 MIA2Q96PC5 1412 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 STAMBPO95630 424 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CTCFLQ8NI51 663 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 STIM2Q9P246 746 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 POTEB3A0JP26 581 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 POTEBQ6S5H4 581 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 PDCP20941 246 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 MAK16Q9BXY0 300 aaKnown RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 HDAC6Q9UBN7 1215 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 IFFO1Q0D2I5 559 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 TPD52L1Q16890 204 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC148Q8NFR7 591 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 TRAK1Q9UPV9 953 aa4.36□□□□□ -1.71
SYNE2-202ENST00000344113 C6orf163Q5TEZ5 329 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 SDR16C5Q8N3Y7 309 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 SMTNL1A8MU46 457 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 LSM1O15116 133 aaKnown RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 MYO1BO43795 1136 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 ZBTB41Q5SVQ8 909 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 RTF1Q92541 710 aaKnown RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 JAKMIP2Q96AA8 810 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 RPS6KA5O75582 802 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 IKBKGQ9Y6K9 419 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 TMEM232C9JQI7 657 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 PRKRIP1Q9H875 184 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 MCTP2Q6DN12 878 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 STMN1P16949 149 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 PODNQ7Z5L7 613 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 HOOK3Q86VS8 718 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 NLRP13Q86W25 1043 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 TUBA4AP68366 448 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 FKBP5Q13451 457 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 COPB2P35606 906 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 NAA16Q6N069 864 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 BICD2Q8TD16 824 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 TRIM5Q9C035 493 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 CLIP2Q9UDT6 1046 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 A0A087WUV0 522 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 DESP17661 470 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 GGA2Q9UJY4 613 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 LRRC23Q53EV4 343 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 IL20Q9NYY1 176 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 DDX41Q9UJV9 622 aaKnown RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 VCX3BQ9H321 246 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 SMIM24O75264 130 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 ZNF513Q8N8E2 541 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 SPTY2D1Q68D10 685 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-202ENST00000344113 CCHCR1Q8TD31 782 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 MAGEC3Q8TD91 643 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 SEPT8Q92599 483 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 IFT74Q96LB3 600 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 PTPRCP08575 1304 aa4.35□□□□□ -1.71
SYNE2-202ENST00000344113 SMC5Q8IY18 1101 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 LRRC43Q8N309 656 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 PTPRGP23470 1445 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 KIF27Q86VH2 1401 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 MAP3K1Q13233 1512 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 RSPH3Q86UC2 560 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 SMARCC2Q8TAQ2 1214 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC28BQ9BUN5 200 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 C3orf20Q8ND61 904 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 SRRM3A6NNA2 597 aaPredicted RBP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC47Q96A33 483 aaKnown RBP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 RABGAP1Q9Y3P9 1069 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 G3BP1Q13283 466 aaKnown RBP eCLIP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 DYNC1I2Q13409 638 aaKnown RBP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 FAM43BQ6ZT52 329 aaPredicted RBP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 KLHL23Q8NBE8 558 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 WWC3Q9ULE0 1092 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 SSX2IPQ9Y2D8 614 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 CHUKO15111 745 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 CWC25Q9NXE8 425 aaPredicted RBP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 TSNAXIP1Q2TAA8 658 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.34□□□□□ -1.71
SYNE2-202ENST00000344113 CHMP2AO43633 222 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 WDR63Q8IWG1 891 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 ARFGAP3Q9NP61 516 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 AKAP2Q9Y2D5 859 aa4.34□□□□□ -1.71
SYNE2-202ENST00000344113 ERC2O15083 957 aa4.34□□□□□ -1.72
SYNE2-202ENST00000344113 PAIP2BQ9ULR5 123 aaKnown RBP4.34□□□□□ -1.72
SYNE2-202ENST00000344113 KDRP35968 1356 aa4.34□□□□□ -1.72
SYNE2-202ENST00000344113 CCDC144BQ3MJ40 725 aa4.34□□□□□ -1.72
SYNE2-202ENST00000344113 CCDC144CPQ8IYA2 1237 aa4.34□□□□□ -1.72
SYNE2-202ENST00000344113 C16orf45Q96MC5 204 aaPredicted RBP4.34□□□□□ -1.72
SYNE2-202ENST00000344113 THUMPD2Q9BTF0 503 aaKnown RBP4.34□□□□□ -1.72
SYNE2-202ENST00000344113 DACH1Q9UI36 760 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms