RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GIGYF1O75420 1035 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-201ENST00000343916 ESYT1Q9BSJ8 1104 aa23.72■■□□□ 1.39
COL9A3-201ENST00000343916 DBF4Q9UBU7 674 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-201ENST00000343916 POLA2Q14181 598 aa23.72■■□□□ 1.39
COL9A3-201ENST00000343916 GBP4Q96PP9 640 aa23.72■■□□□ 1.39
COL9A3-201ENST00000343916 STAP2Q9UGK3 403 aa23.72■■□□□ 1.39
COL9A3-201ENST00000343916 AK9Q5TCS8 1911 aa23.71■■□□□ 1.39
COL9A3-201ENST00000343916 RGPD5Q99666 1765 aa23.71■■□□□ 1.39
COL9A3-201ENST00000343916 TUBGCP6Q96RT7 1819 aa23.71■■□□□ 1.39
COL9A3-201ENST00000343916 ERBB3P21860 1342 aa23.71■■□□□ 1.39
COL9A3-201ENST00000343916 CHMLP26374 656 aa23.7■■□□□ 1.38
COL9A3-201ENST00000343916 ST18O60284 1047 aa23.7■■□□□ 1.38
COL9A3-201ENST00000343916 RHPN1Q8TCX5 695 aa23.7■■□□□ 1.38
COL9A3-201ENST00000343916 MAP3K2Q9Y2U5 619 aa23.7■■□□□ 1.38
COL9A3-201ENST00000343916 MAP4K4O95819 1239 aaPredicted RBP23.69■■□□□ 1.38
COL9A3-201ENST00000343916 CHMP4AQ9BY43 222 aa23.68■■□□□ 1.38
COL9A3-201ENST00000343916 ANO2Q9NQ90 1003 aa23.68■■□□□ 1.38
COL9A3-201ENST00000343916 GOLGA6L3A6NEY3 463 aa23.67■■□□□ 1.38
COL9A3-201ENST00000343916 CWF19L2Q2TBE0 894 aaKnown RBP23.67■■□□□ 1.38
COL9A3-201ENST00000343916 ZGPATQ8N5A5 531 aaKnown RBP23.67■■□□□ 1.38
COL9A3-201ENST00000343916 IL25Q9H293 177 aa23.67■■□□□ 1.38
COL9A3-201ENST00000343916 NLRP2Q9NX02 1062 aa23.67■■□□□ 1.38
COL9A3-201ENST00000343916 RAB11FIP3O75154 756 aa23.67■■□□□ 1.38
COL9A3-201ENST00000343916 PKP1Q13835 747 aa23.67■■□□□ 1.38
COL9A3-201ENST00000343916 PALD1Q9ULE6 856 aa23.67■■□□□ 1.38
COL9A3-201ENST00000343916 SLC39A6Q13433 755 aa23.66■■□□□ 1.38
COL9A3-201ENST00000343916 L1TD1Q5T7N2 865 aaKnown RBP23.66■■□□□ 1.38
COL9A3-201ENST00000343916 FAM43AQ8N2R8 423 aa23.66■■□□□ 1.38
COL9A3-201ENST00000343916 CABLES1Q8TDN4 633 aa23.66■■□□□ 1.38
COL9A3-201ENST00000343916 HEG1Q9ULI3 1381 aa23.66■■□□□ 1.38
COL9A3-201ENST00000343916 FSD2A1L4K1 749 aa23.65■■□□□ 1.38
COL9A3-201ENST00000343916 ATF3P18847 181 aa23.65■■□□□ 1.38
COL9A3-201ENST00000343916 NEK4P51957 841 aa23.65■■□□□ 1.38
COL9A3-201ENST00000343916 LMTK3Q96Q04 1460 aa23.65■■□□□ 1.38
COL9A3-201ENST00000343916 STRCP1A6NGW2 1772 aa23.65■■□□□ 1.38
COL9A3-201ENST00000343916 AIMP1Q12904 312 aaKnown RBP23.65■■□□□ 1.38
COL9A3-201ENST00000343916 KIF1BPQ96EK5 621 aa23.65■■□□□ 1.38
COL9A3-201ENST00000343916 C9orf78Q9NZ63 289 aaPredicted RBP23.65■■□□□ 1.38
COL9A3-201ENST00000343916 CAMTA1Q9Y6Y1 1673 aa23.64■■□□□ 1.38
COL9A3-201ENST00000343916 PI4K2BQ8TCG2 481 aa23.64■■□□□ 1.37
COL9A3-201ENST00000343916 TMEM94Q12767 1356 aa23.64■■□□□ 1.37
COL9A3-201ENST00000343916 XRCC6P12956 609 aaKnown RBP eCLIP23.64■■□□□ 1.37
COL9A3-201ENST00000343916 KSR2Q6VAB6 950 aa23.64■■□□□ 1.37
COL9A3-201ENST00000343916 RAPGEF4Q8WZA2 1011 aa23.64■■□□□ 1.37
COL9A3-201ENST00000343916 OVOS2A0A0G2JMS6 1433 aa23.63■■□□□ 1.37
COL9A3-201ENST00000343916 KIF1AQ12756 1690 aa23.63■■□□□ 1.37
COL9A3-201ENST00000343916 AOX1Q06278 1338 aa23.62■■□□□ 1.37
COL9A3-201ENST00000343916 OS9Q13438 667 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-201ENST00000343916 ALS2Q96Q42 1657 aa23.61■■□□□ 1.37
COL9A3-201ENST00000343916 BAG4O95429 457 aaKnown RBP23.61■■□□□ 1.37
COL9A3-201ENST00000343916 PANK2Q9BZ23 570 aa23.61■■□□□ 1.37
COL9A3-201ENST00000343916 MST1RQ04912 1400 aa23.61■■□□□ 1.37
COL9A3-201ENST00000343916 CHRNA2Q15822 529 aa23.6■■□□□ 1.37
COL9A3-201ENST00000343916 PA2G4Q9UQ80 394 aaKnown RBP23.6■■□□□ 1.37
COL9A3-201ENST00000343916 ZNF790Q6PG37 636 aa23.6■■□□□ 1.37
COL9A3-201ENST00000343916 NFATC2IPQ8NCF5 419 aa23.6■■□□□ 1.37
COL9A3-201ENST00000343916 NOL8Q76FK4 1167 aaKnown RBP23.59■■□□□ 1.37
COL9A3-201ENST00000343916 HYPKQ9NX55 129 aa23.59■■□□□ 1.37
COL9A3-201ENST00000343916 SIPA1L3O60292 1781 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-201ENST00000343916 NPHP3Q7Z494 1330 aa23.59■■□□□ 1.37
COL9A3-201ENST00000343916 CSB-PGBD3P0DP91 1061 aa23.59■■□□□ 1.37
COL9A3-201ENST00000343916 MCCP23508 829 aa23.59■■□□□ 1.37
COL9A3-201ENST00000343916 PDIA6Q15084 440 aa23.59■■□□□ 1.37
COL9A3-201ENST00000343916 ALDH1L1O75891 902 aa23.58■■□□□ 1.37
COL9A3-201ENST00000343916 KDM6AO15550 1401 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-201ENST00000343916 CYP2E1P05181 493 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-201ENST00000343916 NUCB2P80303 420 aa23.58■■□□□ 1.37
COL9A3-201ENST00000343916 CLEC17AQ6ZS10 378 aa23.58■■□□□ 1.37
COL9A3-201ENST00000343916 SLC52A2Q9HAB3 445 aa23.58■■□□□ 1.37
COL9A3-201ENST00000343916 DDX21Q9NR30 783 aaKnown RBP eCLIP23.58■■□□□ 1.37
COL9A3-201ENST00000343916 MYL6BP14649 208 aa23.57■■□□□ 1.36
COL9A3-201ENST00000343916 MTX1Q13505 466 aa23.57■■□□□ 1.36
COL9A3-201ENST00000343916 TMX3Q96JJ7 454 aa23.57■■□□□ 1.36
COL9A3-201ENST00000343916 PHKG2P15735 406 aa23.57■■□□□ 1.36
COL9A3-201ENST00000343916 UPF3BQ9BZI7 483 aaKnown RBP23.57■■□□□ 1.36
COL9A3-201ENST00000343916 CWC22Q9HCG8 908 aaKnown RBP23.57■■□□□ 1.36
COL9A3-201ENST00000343916 MEGF6O75095 1541 aa23.57■■□□□ 1.36
COL9A3-201ENST00000343916 TATP17735 454 aaPredicted RBP23.56■■□□□ 1.36
COL9A3-201ENST00000343916 HSP90AB4PQ58FF6 505 aa23.56■■□□□ 1.36
COL9A3-201ENST00000343916 GOLGA6L22H0YM25 854 aa23.56■■□□□ 1.36
COL9A3-201ENST00000343916 MCTP1Q6DN14 999 aa23.56■■□□□ 1.36
COL9A3-201ENST00000343916 STRCQ7RTU9 1775 aa23.56■■□□□ 1.36
COL9A3-201ENST00000343916 SUCLG2Q96I99 432 aa23.55■■□□□ 1.36
COL9A3-201ENST00000343916 SKOR2Q2VWA4 1001 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-201ENST00000343916 LINS1Q8NG48 757 aa23.55■■□□□ 1.36
COL9A3-201ENST00000343916 KAZALD1Q96I82 304 aa23.55■■□□□ 1.36
COL9A3-201ENST00000343916 ADAMTS7Q9UKP4 1686 aa23.54■■□□□ 1.36
COL9A3-201ENST00000343916 GRM8O00222 908 aa23.54■■□□□ 1.36
COL9A3-201ENST00000343916 PIP4K2AP48426 406 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-201ENST00000343916 RRAGDQ9NQL2 400 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-201ENST00000343916 ZDHHC9Q9Y397 364 aa23.54■■□□□ 1.36
COL9A3-201ENST00000343916 ANAPC15P60006 121 aa23.54■■□□□ 1.36
COL9A3-201ENST00000343916 CNTROBQ8N137 903 aa23.54■■□□□ 1.36
COL9A3-201ENST00000343916 ZNF496Q96IT1 587 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-201ENST00000343916 SPG7Q9UQ90 795 aa23.54■■□□□ 1.36
COL9A3-201ENST00000343916 DDX58O95786 925 aaKnown RBP23.53■■□□□ 1.36
COL9A3-201ENST00000343916 RIC3Q7Z5B4 369 aa23.53■■□□□ 1.36
COL9A3-201ENST00000343916 GAS2L3Q86XJ1 694 aa23.53■■□□□ 1.36
COL9A3-201ENST00000343916 CLASRPQ8N2M8 674 aaKnown RBP23.53■■□□□ 1.36
COL9A3-201ENST00000343916 CHAMP1Q96JM3 812 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms