RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 CABP2Q9NPB3 220 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 CREBZFQ9NS37 354 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 NUP98P52948 1817 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 NBR1Q14596 966 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 RAPGEF4Q8WZA2 1011 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.86□□□□□ -0.83
ZNF540-202ENST00000343599 IGSF3O75054 1194 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 NBPF1Q3BBV0 1214 aa9.86□□□□□ -0.83
ZNF540-202ENST00000343599 PGAP2Q9UHJ9 254 aa9.85□□□□□ -0.83
ZNF540-202ENST00000343599 CNTNAP1P78357 1384 aa9.85□□□□□ -0.83
ZNF540-202ENST00000343599 FYB1O15117 783 aa9.84□□□□□ -0.83
ZNF540-202ENST00000343599 YBX3P16989 372 aaKnown RBP eCLIP9.84□□□□□ -0.83
ZNF540-202ENST00000343599 HEG1Q9ULI3 1381 aa9.84□□□□□ -0.83
ZNF540-202ENST00000343599 A0A1B0GUL6 1792 aa9.84□□□□□ -0.83
ZNF540-202ENST00000343599 PLEKHO1Q53GL0 409 aaPredicted RBP9.84□□□□□ -0.83
ZNF540-202ENST00000343599 FBXO3Q9UK99 471 aa9.84□□□□□ -0.83
ZNF540-202ENST00000343599 COL4A1P02462 1669 aa9.83□□□□□ -0.84
ZNF540-202ENST00000343599 AKAP4Q5JQC9 854 aa9.82□□□□□ -0.84
ZNF540-202ENST00000343599 IL27Q8NEV9 243 aa9.82□□□□□ -0.84
ZNF540-202ENST00000343599 AK7Q96M32 723 aa9.82□□□□□ -0.84
ZNF540-202ENST00000343599 GPBP1L1Q9HC44 474 aaPredicted RBP9.82□□□□□ -0.84
ZNF540-202ENST00000343599 NARFQ9UHQ1 456 aa9.82□□□□□ -0.84
ZNF540-202ENST00000343599 KCNA3P22001 575 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 CARMIL3Q8ND23 1372 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 LOC102724428A0A0B4J2F2 783 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 SIK1P57059 783 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 SENP3-EIF4A1A0A087X0R7 540 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 RASSF10A6NK89 507 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 PIM2Q9P1W9 311 aa9.81□□□□□ -0.84
ZNF540-202ENST00000343599 CSB-PGBD3P0DP91 1061 aa9.8□□□□□ -0.84
ZNF540-202ENST00000343599 GPR162Q16538 588 aa9.8□□□□□ -0.84
ZNF540-202ENST00000343599 PSMD1Q99460 953 aa9.8□□□□□ -0.84
ZNF540-202ENST00000343599 DLG5Q8TDM6 1919 aa9.8□□□□□ -0.84
ZNF540-202ENST00000343599 GLTPD2A6NH11 291 aa9.8□□□□□ -0.84
ZNF540-202ENST00000343599 TFCP2L1Q9NZI6 479 aa9.8□□□□□ -0.84
ZNF540-202ENST00000343599 IQCA1LA6NCM1 817 aa9.79□□□□□ -0.84
ZNF540-202ENST00000343599 LMNB1P20700 586 aa9.79□□□□□ -0.84
ZNF540-202ENST00000343599 CYP27B1O15528 508 aa9.79□□□□□ -0.84
ZNF540-202ENST00000343599 IFNLR1Q8IU57 520 aaPredicted RBP9.79□□□□□ -0.84
ZNF540-202ENST00000343599 RTCBQ9Y3I0 505 aaKnown RBP9.79□□□□□ -0.84
ZNF540-202ENST00000343599 PDE6BP35913 854 aa9.78□□□□□ -0.84
ZNF540-202ENST00000343599 TRAPPC3LQ5T215 181 aa9.78□□□□□ -0.84
ZNF540-202ENST00000343599 LDHDQ86WU2 507 aa9.78□□□□□ -0.84
ZNF540-202ENST00000343599 BRIP1Q9BX63 1249 aa9.78□□□□□ -0.84
ZNF540-202ENST00000343599 ATG3Q9NT62 314 aa9.78□□□□□ -0.84
ZNF540-202ENST00000343599 IL6STP40189 918 aaPredicted RBP9.77□□□□□ -0.84
ZNF540-202ENST00000343599 ZC3H15Q8WU90 426 aaKnown RBP9.77□□□□□ -0.84
ZNF540-202ENST00000343599 NLRP2Q9NX02 1062 aa9.77□□□□□ -0.84
ZNF540-202ENST00000343599 TMOD3Q9NYL9 352 aa9.77□□□□□ -0.84
ZNF540-202ENST00000343599 PARP3Q9Y6F1 533 aa9.77□□□□□ -0.84
ZNF540-202ENST00000343599 GYS1P13807 737 aa9.77□□□□□ -0.85
ZNF540-202ENST00000343599 NBPF6Q5VWK0 638 aa9.77□□□□□ -0.85
ZNF540-202ENST00000343599 NME9Q86XW9 330 aa9.77□□□□□ -0.85
ZNF540-202ENST00000343599 NBPF4Q96M43 638 aa9.77□□□□□ -0.85
ZNF540-202ENST00000343599 CARD11Q9BXL7 1154 aa9.77□□□□□ -0.85
ZNF540-202ENST00000343599 POLRMTO00411 1230 aaKnown RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 LINC00116Q8NCU8 138 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 HIRIP3Q9BW71 556 aaPredicted RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 RTFDC1Q9BY42 306 aaPredicted RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 A0A0G2JS52 829 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 MAP2K2P36507 400 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 PRIM1P49642 420 aaKnown RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 PNISRQ8TF01 805 aaKnown RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 CHMP4AQ9BY43 222 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 ERVV-1B6SEH8 477 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 ZBTB7AO95365 584 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 DALRD3Q5D0E6 543 aaKnown RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 PNMA8AQ86V59 439 aaPredicted RBP9.76□□□□□ -0.85
ZNF540-202ENST00000343599 PIGBQ92521 554 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 CNKSR1Q969H4 720 aa9.76□□□□□ -0.85
ZNF540-202ENST00000343599 TAF1P21675 1872 aa9.75□□□□□ -0.85
ZNF540-202ENST00000343599 COL15A1P39059 1388 aa9.75□□□□□ -0.85
ZNF540-202ENST00000343599 HOXA10P31260 410 aaPredicted RBP9.75□□□□□ -0.85
ZNF540-202ENST00000343599 AMPHP49418 695 aa9.75□□□□□ -0.85
ZNF540-202ENST00000343599 CTCFP49711 727 aaPredicted RBP9.74□□□□□ -0.85
ZNF540-202ENST00000343599 VEGFAP15692 232 aaPredicted RBP9.74□□□□□ -0.85
ZNF540-202ENST00000343599 CACNA1SQ13698 1873 aa9.74□□□□□ -0.85
ZNF540-202ENST00000343599 NEFLP07196 543 aa9.74□□□□□ -0.85
ZNF540-202ENST00000343599 RTKN2Q8IZC4 609 aa9.74□□□□□ -0.85
ZNF540-202ENST00000343599 GCC1Q96CN9 775 aa9.74□□□□□ -0.85
ZNF540-202ENST00000343599 PKN2Q16513 984 aaKnown RBP9.73□□□□□ -0.85
ZNF540-202ENST00000343599 CHADLQ6NUI6 762 aa9.73□□□□□ -0.85
ZNF540-202ENST00000343599 MYH3P11055 1940 aa9.73□□□□□ -0.85
ZNF540-202ENST00000343599 FKBP1BP68106 108 aa9.72□□□□□ -0.85
ZNF540-202ENST00000343599 AKAP11Q9UKA4 1901 aa9.72□□□□□ -0.85
ZNF540-202ENST00000343599 SLX4Q8IY92 1834 aa9.72□□□□□ -0.85
ZNF540-202ENST00000343599 MAP2K1Q02750 393 aaPredicted RBP9.72□□□□□ -0.85
ZNF540-202ENST00000343599 SUPT20HQ8NEM7 779 aa9.72□□□□□ -0.85
ZNF540-202ENST00000343599 C1orf115Q9H7X2 142 aa9.72□□□□□ -0.85
ZNF540-202ENST00000343599 EIF5P55010 431 aaKnown RBP9.71□□□□□ -0.85
ZNF540-202ENST00000343599 GLIPR1L2Q4G1C9 344 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 INTS5Q6P9B9 1019 aaKnown RBP9.71□□□□□ -0.85
ZNF540-202ENST00000343599 USP50Q70EL3 339 aaPredicted RBP9.71□□□□□ -0.85
ZNF540-202ENST00000343599 NLGN2Q8NFZ4 835 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 C7orf43Q8WVR3 580 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 RTL9Q8NET4 1388 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 CRY2Q49AN0 593 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 SLC10A5Q5PT55 438 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 SLC52A2Q9HAB3 445 aa9.71□□□□□ -0.85
ZNF540-202ENST00000343599 POLKQ9UBT6 870 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms