RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 PLEKHH1Q9ULM0 1364 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 USP37Q86T82 979 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 TXNDC16Q9P2K2 825 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 LUC7L2Q9Y383 392 aaKnown RBP20.28■□□□□ 0.84
SMAD4-201ENST00000342988 ATP2A2P16615 1042 aaKnown RBP20.28■□□□□ 0.84
SMAD4-201ENST00000342988 PRR16Q569H4 304 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 CCDC7Q96M83 1385 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 ESPNB1AK53 854 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 ZNF853P0CG23 659 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 K7ELQ4 463 aaPredicted RBP20.28■□□□□ 0.84
SMAD4-201ENST00000342988 TDRD12Q587J7 1177 aaKnown RBP20.28■□□□□ 0.84
SMAD4-201ENST00000342988 ZSCAN29Q8IWY8 852 aaPredicted RBP20.28■□□□□ 0.84
SMAD4-201ENST00000342988 NUF2Q9BZD4 464 aa20.28■□□□□ 0.84
SMAD4-201ENST00000342988 SEPT14Q6ZU15 432 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 STMN2Q93045 179 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 A0A087WZG4 1122 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 BLOC1S2Q6QNY1 142 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 ZSCAN30Q86W11 494 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 DZIP1Q86YF9 867 aaKnown RBP20.27■□□□□ 0.84
SMAD4-201ENST00000342988 UTP14AQ9BVJ6 771 aaKnown RBP20.27■□□□□ 0.84
SMAD4-201ENST00000342988 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.27■□□□□ 0.841e-6■□□□□ 10.8
SMAD4-201ENST00000342988 SURF6O75683 361 aaKnown RBP20.27■□□□□ 0.84
SMAD4-201ENST00000342988 URI1O94763 535 aaPredicted RBP20.27■□□□□ 0.84
SMAD4-201ENST00000342988 CFAP157Q5JU67 520 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 TRIM7Q9C029 511 aa20.27■□□□□ 0.84
SMAD4-201ENST00000342988 RAB3GAP2Q9H2M9 1393 aa20.27■□□□□ 0.83
SMAD4-201ENST00000342988 CCDC82Q8N4S0 544 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 PAXBP1Q9Y5B6 917 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 ATP11AP98196 1134 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 VCXQ9H320 206 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 JADE2Q9NQC1 790 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 TRAK1Q9UPV9 953 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 RNF168Q8IYW5 571 aaPredicted RBP20.26■□□□□ 0.83
SMAD4-201ENST00000342988 USP5P45974 858 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 WDR70Q9NW82 654 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 ATF3P18847 181 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 ZBTB17Q13105 803 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 SEPT8Q92599 483 aa20.26■□□□□ 0.83
SMAD4-201ENST00000342988 NOP2P46087 812 aaKnown RBP20.25■□□□□ 0.83
SMAD4-201ENST00000342988 CCDC63Q8NA47 563 aa20.25■□□□□ 0.83
SMAD4-201ENST00000342988 STK3Q13188 491 aa20.25■□□□□ 0.83
SMAD4-201ENST00000342988 CEP128Q6ZU80 1094 aa20.25■□□□□ 0.83
SMAD4-201ENST00000342988 CIB2O75838 187 aa20.25■□□□□ 0.83
SMAD4-201ENST00000342988 RFC1P35251 1148 aaPredicted RBP20.25■□□□□ 0.83
SMAD4-201ENST00000342988 SH3BGRP55822 239 aaPredicted RBP20.25■□□□□ 0.83
SMAD4-201ENST00000342988 CCDC121Q6ZUS5 278 aa20.25■□□□□ 0.83
SMAD4-201ENST00000342988 GTF2F1P35269 517 aaKnown RBP eCLIP20.24■□□□□ 0.83
SMAD4-201ENST00000342988 CACNA2D3Q8IZS8 1091 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 ATP6V1E1P36543 226 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 MVPQ14764 893 aaKnown RBP20.24■□□□□ 0.83
SMAD4-201ENST00000342988 CCDC89Q8N998 374 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 UBA5Q9GZZ9 404 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 MAP7Q14244 749 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 CCDC183Q5T5S1 534 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 CIZ1Q9ULV3 898 aaPredicted RBP20.24■□□□□ 0.83
SMAD4-201ENST00000342988 ZNF710Q8N1W2 664 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 WHAMMQ8TF30 809 aa20.24■□□□□ 0.83
SMAD4-201ENST00000342988 U3KPZ7 1027 aaPredicted RBP20.23■□□□□ 0.83
SMAD4-201ENST00000342988 CCT6BQ92526 530 aa20.23■□□□□ 0.83
SMAD4-201ENST00000342988 ZNF354CQ86Y25 554 aa20.22■□□□□ 0.83
SMAD4-201ENST00000342988 SCAPERQ9BY12 1400 aa20.22■□□□□ 0.83
SMAD4-201ENST00000342988 CASTP20810 708 aaKnown RBP20.22■□□□□ 0.83
SMAD4-201ENST00000342988 LACTBP83111 547 aaPredicted RBP20.22■□□□□ 0.83
SMAD4-201ENST00000342988 PPP1R1BQ9UD71 204 aaPredicted RBP20.22■□□□□ 0.83
SMAD4-201ENST00000342988 BAG4O95429 457 aaKnown RBP20.22■□□□□ 0.83
SMAD4-201ENST00000342988 CCT4P50991 539 aaKnown RBP20.22■□□□□ 0.83
SMAD4-201ENST00000342988 AFAP1L2Q8N4X5 818 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 IFT74Q96LB3 600 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 USP47Q96K76 1375 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 GBP1P32455 592 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 SETDB1Q15047 1291 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 TTC31Q49AM3 519 aaPredicted RBP20.21■□□□□ 0.83
SMAD4-201ENST00000342988 HMGB3O15347 200 aaKnown RBP20.21■□□□□ 0.83
SMAD4-201ENST00000342988 ERCC5P28715 1186 aaPredicted RBP20.21■□□□□ 0.83
SMAD4-201ENST00000342988 CCDC96Q2M329 555 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 ARFGAP3Q9NP61 516 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 LRRC27Q9C0I9 530 aa20.21■□□□□ 0.83
SMAD4-201ENST00000342988 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.21■□□□□ 0.83
SMAD4-201ENST00000342988 SYCP3Q8IZU3 236 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 GABPB2Q8TAK5 448 aaPredicted RBP20.2■□□□□ 0.82
SMAD4-201ENST00000342988 ARID4AP29374 1257 aaPredicted RBP20.2■□□□□ 0.82
SMAD4-201ENST00000342988 A0A1B0GUA9 196 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 CAVIN2O95810 425 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 TBC1D31Q96DN5 1066 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 GAS2L2Q8NHY3 880 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 KLHL10Q6JEL2 608 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 KANK3Q6NY19 840 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 CALML4Q96GE6 196 aa20.2■□□□□ 0.82
SMAD4-201ENST00000342988 CRCPO75575 148 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 PFDN4Q9NQP4 134 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 CEP57Q86XR8 500 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 TACC3Q9Y6A5 838 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 CTAGE6Q86UF2 777 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 AKAP2Q9Y2D5 859 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 NOC2LQ9Y3T9 749 aaKnown RBP20.19■□□□□ 0.82
SMAD4-201ENST00000342988 CCDC171Q6TFL3 1326 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 ATP5DP30049 168 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 VPS52Q8N1B4 723 aa20.19■□□□□ 0.82
SMAD4-201ENST00000342988 CCDC12Q8WUD4 166 aaPredicted RBP20.19■□□□□ 0.82
SMAD4-201ENST00000342988 HVCN1Q96D96 273 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms