RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 GNAI2P04899 355 aa16.15■□□□□ 0.18
COL18A1-201ENST00000342220 NBPF7P0C2Y1 421 aaPredicted RBP16.15■□□□□ 0.18
COL18A1-201ENST00000342220 DNAAF4Q8WXU2 420 aa16.15■□□□□ 0.18
COL18A1-201ENST00000342220 ASAP1Q9ULH1 1129 aa16.15■□□□□ 0.18
COL18A1-201ENST00000342220 SURF6O75683 361 aaKnown RBP16.14■□□□□ 0.17
COL18A1-201ENST00000342220 SIRT2Q8IXJ6 389 aa16.14■□□□□ 0.17
COL18A1-201ENST00000342220 CHD1LQ86WJ1 897 aa16.14■□□□□ 0.17
COL18A1-201ENST00000342220 UPF2Q9HAU5 1272 aaKnown RBP16.14■□□□□ 0.17
COL18A1-201ENST00000342220 MAP4K4O95819 1239 aaPredicted RBP16.13■□□□□ 0.17
COL18A1-201ENST00000342220 STRCP1A6NGW2 1772 aa16.13■□□□□ 0.17
COL18A1-201ENST00000342220 KIF24Q5T7B8 1368 aa16.13■□□□□ 0.17
COL18A1-201ENST00000342220 SRGAP3O43295 1099 aa16.13■□□□□ 0.17
COL18A1-201ENST00000342220 CCT4P50991 539 aaKnown RBP16.13■□□□□ 0.17
COL18A1-201ENST00000342220 ARHGAP45Q92619 1136 aa16.13■□□□□ 0.17
COL18A1-201ENST00000342220 TBC1D32Q96NH3 1257 aa16.13■□□□□ 0.17
COL18A1-201ENST00000342220 FMNL2Q96PY5 1086 aa16.13■□□□□ 0.17
COL18A1-201ENST00000342220 PHRF1Q9P1Y6 1649 aaKnown RBP16.13■□□□□ 0.17
COL18A1-201ENST00000342220 PRIM1P49642 420 aaKnown RBP16.13■□□□□ 0.17
COL18A1-201ENST00000342220 MEGF6O75095 1541 aa16.12■□□□□ 0.17
COL18A1-201ENST00000342220 PNMA6EA0A0J9YXQ4 647 aa16.12■□□□□ 0.17
COL18A1-201ENST00000342220 TRIM6-TRIM34B2RNG4 842 aa16.12■□□□□ 0.17
COL18A1-201ENST00000342220 ABCC4O15439 1325 aa16.11■□□□□ 0.17
COL18A1-201ENST00000342220 PTPRCP08575 1304 aa16.11■□□□□ 0.17
COL18A1-201ENST00000342220 NEXNQ0ZGT2 675 aa16.11■□□□□ 0.17
COL18A1-201ENST00000342220 HMMRO75330 724 aa16.11■□□□□ 0.17
COL18A1-201ENST00000342220 SNRPA1P09661 255 aaKnown RBP16.11■□□□□ 0.17
COL18A1-201ENST00000342220 HSP90AB1P08238 724 aaKnown RBP16.1■□□□□ 0.17
COL18A1-201ENST00000342220 GPTP24298 496 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 DDB1Q16531 1140 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 KLHDC4Q8TBB5 520 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 RILPL2Q969X0 211 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 PA2G4Q9UQ80 394 aaKnown RBP16.1■□□□□ 0.17
COL18A1-201ENST00000342220 DDX58O95786 925 aaKnown RBP16.1■□□□□ 0.17
COL18A1-201ENST00000342220 CEP85Q6P2H3 762 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 CARD10Q9BWT7 1032 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 NFAT5O94916 1531 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 NUTM1Q86Y26 1132 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 TBC1D2Q9BYX2 928 aa16.1■□□□□ 0.17
COL18A1-201ENST00000342220 SMIM5Q71RC9 77 aa16.09■□□□□ 0.17
COL18A1-201ENST00000342220 PCDH11XQ9BZA7 1347 aa16.09■□□□□ 0.17
COL18A1-201ENST00000342220 PCDH11YQ9BZA8 1340 aa16.09■□□□□ 0.17
COL18A1-201ENST00000342220 GNAI3P08754 354 aa16.09■□□□□ 0.17
COL18A1-201ENST00000342220 INTS3Q68E01 1043 aaKnown RBP16.09■□□□□ 0.17
COL18A1-201ENST00000342220 PDE4CQ08493 712 aa16.09■□□□□ 0.17
COL18A1-201ENST00000342220 PPP1R42Q7Z4L9 355 aa16.09■□□□□ 0.17
COL18A1-201ENST00000342220 MED1Q15648 1581 aaPredicted RBP16.08■□□□□ 0.17
COL18A1-201ENST00000342220 DCCP43146 1447 aa16.08■□□□□ 0.17
COL18A1-201ENST00000342220 DNAJC10Q8IXB1 793 aa16.08■□□□□ 0.17
COL18A1-201ENST00000342220 ANTXR1Q9H6X2 564 aa16.08■□□□□ 0.17
COL18A1-201ENST00000342220 FGD1P98174 961 aa16.08■□□□□ 0.16
COL18A1-201ENST00000342220 USP44Q9H0E7 712 aa16.08■□□□□ 0.16
COL18A1-201ENST00000342220 TRPM3Q9HCF6 1732 aaPredicted RBP16.08■□□□□ 0.16
COL18A1-201ENST00000342220 XIRP1Q702N8 1843 aaKnown RBP16.08■□□□□ 0.16
COL18A1-201ENST00000342220 STRCQ7RTU9 1775 aa16.08■□□□□ 0.16
COL18A1-201ENST00000342220 TTLL7Q6ZT98 887 aa16.07■□□□□ 0.16
COL18A1-201ENST00000342220 UBE3BQ7Z3V4 1068 aa16.07■□□□□ 0.16
COL18A1-201ENST00000342220 KIF1AQ12756 1690 aa16.07■□□□□ 0.16
COL18A1-201ENST00000342220 ANKRD13DQ6ZTN6 518 aa16.07■□□□□ 0.16
COL18A1-201ENST00000342220 HDAC1Q13547 482 aaPredicted RBP16.06■□□□□ 0.16
COL18A1-201ENST00000342220 TBC1D2BQ9UPU7 963 aa16.06■□□□□ 0.16
COL18A1-201ENST00000342220 PIGBQ92521 554 aa16.06■□□□□ 0.16
COL18A1-201ENST00000342220 LTN1O94822 1766 aa16.06■□□□□ 0.16
COL18A1-201ENST00000342220 DLG5Q8TDM6 1919 aa16.06■□□□□ 0.16
COL18A1-201ENST00000342220 KCNQ2O43526 872 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 ANKRD44Q8N8A2 993 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 DDX21Q9NR30 783 aaKnown RBP eCLIP16.04■□□□□ 0.16
COL18A1-201ENST00000342220 HYPKQ9NX55 129 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 A0A087WZG4 1122 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 NUCB1Q02818 461 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 KSR2Q6VAB6 950 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 SMC5Q8IY18 1101 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 FOXD4L1Q9NU39 408 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 CAMTA1Q9Y6Y1 1673 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 RGPD2P0DJD1 1756 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 CEMIPQ8WUJ3 1361 aa16.04■□□□□ 0.16
COL18A1-201ENST00000342220 RPAP2Q8IXW5 612 aaPredicted RBP16.03■□□□□ 0.16
COL18A1-201ENST00000342220 GCC1Q96CN9 775 aa16.03■□□□□ 0.16
COL18A1-201ENST00000342220 C22orf23Q9BZE7 217 aa16.03■□□□□ 0.16
COL18A1-201ENST00000342220 BICDL1Q6ZP65 573 aa16.03■□□□□ 0.16
COL18A1-201ENST00000342220 NCOA3Q9Y6Q9 1424 aa16.03■□□□□ 0.16
COL18A1-201ENST00000342220 GOLGB1Q14789 3259 aaKnown RBP16.02■□□□□ 0.16
COL18A1-201ENST00000342220 NPHP1O15259 732 aa16.02■□□□□ 0.15
COL18A1-201ENST00000342220 HSPA1LP34931 641 aa16.02■□□□□ 0.15
COL18A1-201ENST00000342220 KDM6AO15550 1401 aaPredicted RBP16.02■□□□□ 0.15
COL18A1-201ENST00000342220 USP21Q9UK80 565 aa16.01■□□□□ 0.15
COL18A1-201ENST00000342220 BEND3Q5T5X7 828 aa16.01■□□□□ 0.15
COL18A1-201ENST00000342220 BRPF1P55201 1214 aaPredicted RBP16■□□□□ 0.15
COL18A1-201ENST00000342220 CHMP4AQ9BY43 222 aa16■□□□□ 0.15
COL18A1-201ENST00000342220 LRRCC1Q9C099 1032 aa16■□□□□ 0.15
COL18A1-201ENST00000342220 NOL8Q76FK4 1167 aaKnown RBP16■□□□□ 0.15
COL18A1-201ENST00000342220 CCDC8Q9H0W5 538 aaPredicted RBP16■□□□□ 0.15
COL18A1-201ENST00000342220 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16■□□□□ 0.15
COL18A1-201ENST00000342220 CRYBG1Q9Y4K1 1723 aa15.99■□□□□ 0.15
COL18A1-201ENST00000342220 ATP6V1AP38606 617 aa15.99■□□□□ 0.15
COL18A1-201ENST00000342220 ALS2Q96Q42 1657 aa15.99■□□□□ 0.15
COL18A1-201ENST00000342220 BICC1Q9H694 974 aaKnown RBP15.99■□□□□ 0.15
COL18A1-201ENST00000342220 SUCLG2Q96I99 432 aa15.99■□□□□ 0.15
COL18A1-201ENST00000342220 DCTPP1Q9H773 170 aa15.99■□□□□ 0.15
COL18A1-201ENST00000342220 NBPF26B4DH59 902 aa15.98■□□□□ 0.15
COL18A1-201ENST00000342220 GRM8O00222 908 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms