RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLC12A7Q9Y666 1083 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 GIMAP7Q8NHV1 300 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 UBXN4Q92575 508 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 JARID2Q92833 1246 aaPredicted RBP14.66□□□□□ -0.06
SDC3-201ENST00000336798 TRMT1Q9NXH9 659 aaKnown RBP14.66□□□□□ -0.06
SDC3-201ENST00000336798 WAPLQ7Z5K2 1190 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 FERMT2Q96AC1 680 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 DRC1Q96MC2 740 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 ZNF287Q9HBT7 754 aa14.66□□□□□ -0.06
SDC3-201ENST00000336798 U3KPZ7 1027 aaPredicted RBP14.66□□□□□ -0.06
SDC3-201ENST00000336798 CTCFLQ8NI51 663 aaPredicted RBP14.65□□□□□ -0.06
SDC3-201ENST00000336798 AKAP2Q9Y2D5 859 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 BIN1O00499 593 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 CKAP2LQ8IYA6 745 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 CCDC150Q8NCX0 1101 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 URI1O94763 535 aaPredicted RBP14.65□□□□□ -0.06
SDC3-201ENST00000336798 C8orf76Q96K31 380 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 SAMM50Q9Y512 469 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 MX1P20591 662 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 PRPF4BQ13523 1007 aaKnown RBP14.65□□□□□ -0.06
SDC3-201ENST00000336798 TCERG1LQ5VWI1 586 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 TICAM2Q86XR7 235 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 CUX1P39880 1505 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 KIF4BQ2VIQ3 1234 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 WDR63Q8IWG1 891 aa14.65□□□□□ -0.06
SDC3-201ENST00000336798 FEZ1Q99689 392 aa14.64□□□□□ -0.07
SDC3-201ENST00000336798 IFIT5Q13325 482 aaKnown RBP14.64□□□□□ -0.07
SDC3-201ENST00000336798 SCAPERQ9BY12 1400 aa14.64□□□□□ -0.07
SDC3-201ENST00000336798 FGD5Q6ZNL6 1462 aa14.64□□□□□ -0.07
SDC3-201ENST00000336798 SSRP1Q08945 709 aaKnown RBP14.64□□□□□ -0.07
SDC3-201ENST00000336798 ZNF213O14771 459 aa14.64□□□□□ -0.07
SDC3-201ENST00000336798 STAC3Q96MF2 364 aa14.64□□□□□ -0.07
SDC3-201ENST00000336798 ZBTB3Q9H5J0 574 aa14.64□□□□□ -0.07
SDC3-201ENST00000336798 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.64□□□□□ -0.07
SDC3-201ENST00000336798 IFIT3O14879 490 aaKnown RBP14.63□□□□□ -0.07
SDC3-201ENST00000336798 WDHD1O75717 1129 aaPredicted RBP14.63□□□□□ -0.07
SDC3-201ENST00000336798 TAF7Q15545 349 aaPredicted RBP14.63□□□□□ -0.07
SDC3-201ENST00000336798 NUDT16Q96DE0 195 aaKnown RBP14.63□□□□□ -0.07
SDC3-201ENST00000336798 ERBINQ96RT1 1412 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 GOLGA8AA7E2F4 631 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 GOLGA8BA8MQT2 603 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 TMCO5BA8MYB1 307 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 TOP1P11387 765 aaKnown RBP14.63□□□□□ -0.07
SDC3-201ENST00000336798 SNRKQ9NRH2 765 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 POLR3GO15318 223 aaPredicted RBP14.63□□□□□ -0.07
SDC3-201ENST00000336798 KIF5CO60282 957 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 SLC5A1P13866 664 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 MAP3K12Q12852 859 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 TMEM266Q2M3C6 531 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 KIF1BPQ96EK5 621 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 DNAI2Q9GZS0 605 aa14.63□□□□□ -0.07
SDC3-201ENST00000336798 NFE2L2Q16236 605 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 ZNF622Q969S3 477 aaKnown RBP eCLIP14.62□□□□□ -0.07
SDC3-201ENST00000336798 NCOA2Q15596 1464 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 CCDC194A0A1B0GVG4 234 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 SFPQP23246 707 aaKnown RBP eCLIP14.62□□□□□ -0.07
SDC3-201ENST00000336798 RNF187Q5TA31 235 aaPredicted RBP14.62□□□□□ -0.07
SDC3-201ENST00000336798 HAND2P61296 217 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 HOOK3Q86VS8 718 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 BACH2Q9BYV9 841 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 CEP63Q96MT8 703 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 TMPOP42166 694 aaKnown RBP14.62□□□□□ -0.07
SDC3-201ENST00000336798 PTPN14Q15678 1187 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 CNNM3Q8NE01 707 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 ANKRD30BQ9BXX2 1392 aa14.62□□□□□ -0.07
SDC3-201ENST00000336798 IQCA1Q86XH1 822 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 PRC1O43663 620 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 IDEP14735 1019 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 TERF1P54274 439 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 GDPD2Q9HCC8 539 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 MCM4P33991 863 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 MTIF2P46199 727 aaKnown RBP14.61□□□□□ -0.07
SDC3-201ENST00000336798 ZNF354CQ86Y25 554 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 PDCL2Q8N4E4 241 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 ZFP91Q96JP5 570 aaPredicted RBP14.61□□□□□ -0.07
SDC3-201ENST00000336798 ESPNB1AK53 854 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 STAMBPO95630 424 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 NBPF8Q3BBV2 869 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 CCDC184Q52MB2 194 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 VPS36Q86VN1 386 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 IPO4Q8TEX9 1081 aaKnown RBP14.61□□□□□ -0.07
SDC3-201ENST00000336798 CLIP2Q9UDT6 1046 aa14.61□□□□□ -0.07
SDC3-201ENST00000336798 SYCP3Q8IZU3 236 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 NSD3Q9BZ95 1437 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 SHTN1A0MZ66 631 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 ATP5J2-PTCD1G3V325 749 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 HLTFQ14527 1009 aaKnown RBP eCLIP14.6□□□□□ -0.07
SDC3-201ENST00000336798 NGLY1Q96IV0 654 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 TFIP11Q9UBB9 837 aaKnown RBP14.6□□□□□ -0.07
SDC3-201ENST00000336798 RAB11FIP3O75154 756 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 CCDC40Q4G0X9 1142 aa14.6□□□□□ -0.07
SDC3-201ENST00000336798 ANKRD18BA2A2Z9 1011 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 TSHZ3Q63HK5 1081 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 NOP2P46087 812 aaKnown RBP14.59□□□□□ -0.07
SDC3-201ENST00000336798 RPAP2Q8IXW5 612 aaPredicted RBP14.59□□□□□ -0.07
SDC3-201ENST00000336798 GOLIM4O00461 696 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 HMGB2P26583 209 aaKnown RBP14.59□□□□□ -0.07
SDC3-201ENST00000336798 BICD1Q96G01 975 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 GLRX3O76003 335 aaKnown RBP14.59□□□□□ -0.07
SDC3-201ENST00000336798 SMC1AQ14683 1233 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms