RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NOB1Q9ULX3 412 aaKnown RBP16.45■□□□□ 0.22
COL7A1-201ENST00000328333 MAATS1Q7Z4T9 603 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 PRDM10Q9NQV6 1147 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 TTC21AQ8NDW8 1320 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 NCOA2Q15596 1464 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 PSME1Q06323 249 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 TMEM266Q2M3C6 531 aa16.44■□□□□ 0.22
COL7A1-201ENST00000328333 ADCY5O95622 1261 aa16.44■□□□□ 0.22
COL7A1-201ENST00000328333 AMPD3Q01432 767 aa16.44■□□□□ 0.22
COL7A1-201ENST00000328333 JAKMIP1Q96N16 626 aaKnown RBP16.44■□□□□ 0.22
COL7A1-201ENST00000328333 FAM135AQ9P2D6 1515 aa16.44■□□□□ 0.22
COL7A1-201ENST00000328333 ZHX1Q9UKY1 873 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-201ENST00000328333 GPRASP1Q5JY77 1395 aa16.44■□□□□ 0.22
COL7A1-201ENST00000328333 RPAP2Q8IXW5 612 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-201ENST00000328333 IQCGQ9H095 443 aaKnown RBP16.44■□□□□ 0.22
COL7A1-201ENST00000328333 MINK1Q8N4C8 1332 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-201ENST00000328333 RBM25P49756 843 aaKnown RBP16.43■□□□□ 0.22
COL7A1-201ENST00000328333 ARFGAP2Q8N6H7 521 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 XPCQ01831 940 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-201ENST00000328333 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.43■□□□□ 0.22
COL7A1-201ENST00000328333 POTEDQ86YR6 584 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 LRRC27Q9C0I9 530 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 PPP4R3AQ6IN85 833 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 CCDC77Q9BR77 488 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 JADE2Q9NQC1 790 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 HOMER2Q9NSB8 354 aa16.43■□□□□ 0.22
COL7A1-201ENST00000328333 SMAP1Q8IYB5 467 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-201ENST00000328333 GLRX3O76003 335 aaKnown RBP16.42■□□□□ 0.22
COL7A1-201ENST00000328333 STXBP4Q6ZWJ1 553 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 LRRC45Q96CN5 670 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 ACTN2P35609 894 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 SELENOOQ9BVL4 669 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 ZSCAN16Q9H4T2 348 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-201ENST00000328333 ATP2A1O14983 1001 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 ANAPC4Q9UJX5 808 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 RMND1Q9NWS8 449 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 A0A087WZG4 1122 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 BMP15O95972 392 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 PPP1R14CQ8TAE6 165 aa16.42■□□□□ 0.22
COL7A1-201ENST00000328333 CTNNA2P26232 953 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 GOLGA1Q92805 767 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 ZHX3Q9H4I2 956 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 EIF2AK4Q9P2K8 1649 aaKnown RBP16.41■□□□□ 0.22
COL7A1-201ENST00000328333 ERBINQ96RT1 1412 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 CCDC12Q8WUD4 166 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-201ENST00000328333 CUL7Q14999 1698 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 ZWINTO95229 277 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 TACC1O75410 805 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 FAM184BQ9ULE4 1060 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 KIAA0753Q2KHM9 967 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 NECTIN2Q92692 538 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 MKRN1Q9UHC7 482 aaKnown RBP16.41■□□□□ 0.22
COL7A1-201ENST00000328333 LIMCH1Q9UPQ0 1083 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 PAIP2Q9BPZ3 127 aaKnown RBP16.41■□□□□ 0.22
COL7A1-201ENST00000328333 ANKRD30BQ9BXX2 1392 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 MYO10Q9HD67 2058 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 C8orf76Q96K31 380 aa16.41■□□□□ 0.22
COL7A1-201ENST00000328333 A0A1W2PRG0 241 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 CLGNO14967 610 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 PPP2R1AP30153 589 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 ALDH1L2Q3SY69 923 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 CAPN2P17655 700 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 A0A1B0GUL7 405 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 MAP3K9P80192 1104 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 HMG20BQ9P0W2 317 aa16.4■□□□□ 0.22
COL7A1-201ENST00000328333 PLEKHO1Q53GL0 409 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-201ENST00000328333 SPAG1Q07617 926 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 LUC7L2Q9Y383 392 aaKnown RBP16.39■□□□□ 0.21
COL7A1-201ENST00000328333 SARNPP82979 210 aaKnown RBP16.39■□□□□ 0.21
COL7A1-201ENST00000328333 BCCIPQ9P287 314 aaKnown RBP eCLIP16.39■□□□□ 0.21
COL7A1-201ENST00000328333 ALDH3A1P30838 453 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 ZNF165P49910 485 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 LACTBP83111 547 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-201ENST00000328333 TUBB2AQ13885 445 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 CAMK4Q16566 473 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 USP37Q86T82 979 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 AACSQ86V21 672 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 TUBB2BQ9BVA1 445 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 OTUD6BQ8N6M0 293 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 LIG1P18858 919 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 STK3Q13188 491 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 HYPKQ9NX55 129 aa16.39■□□□□ 0.21
COL7A1-201ENST00000328333 ATP5DP30049 168 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 MIPOL1Q8TD10 442 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 TSGA10Q9BZW7 698 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 CNNM1Q9NRU3 951 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 CTAGE15A4D2H0 777 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 CTAGE8P0CG41 777 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 CTAGE6Q86UF2 777 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 CTAGE4Q8IX94 777 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 OGFRQ9NZT2 677 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 KIAA1107Q9UPP5 1409 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 LRPPRCP42704 1394 aaKnown RBP16.38■□□□□ 0.21
COL7A1-201ENST00000328333 MTHFSP49914 203 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 TNPO1Q92973 898 aaKnown RBP16.38■□□□□ 0.21
COL7A1-201ENST00000328333 PTPN23Q9H3S7 1636 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 MX1P20591 662 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL7A1-201ENST00000328333 SAMD15Q9P1V8 674 aa16.38■□□□□ 0.21
COL7A1-201ENST00000328333 MAP4K4O95819 1239 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms