RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 PALD1Q9ULE6 856 aa14.1□□□□□ -0.15
PTPN2-201ENST00000309660 CEMIPQ8WUJ3 1361 aa14.1□□□□□ -0.15
PTPN2-201ENST00000309660 ATF3P18847 181 aa14.1□□□□□ -0.15
PTPN2-201ENST00000309660 FOXD4L6Q3SYB3 417 aaPredicted RBP14.1□□□□□ -0.15
PTPN2-201ENST00000309660 BEND3Q5T5X7 828 aa14.1□□□□□ -0.15
PTPN2-201ENST00000309660 FOXD4L3Q6VB84 417 aaPredicted RBP14.1□□□□□ -0.15
PTPN2-201ENST00000309660 DDX49Q9Y6V7 483 aaKnown RBP14.1□□□□□ -0.15
PTPN2-201ENST00000309660 CHMLP26374 656 aa14.09□□□□□ -0.15
PTPN2-201ENST00000309660 CHAMP1Q96JM3 812 aa14.09□□□□□ -0.15
PTPN2-201ENST00000309660 PA2G4Q9UQ80 394 aaKnown RBP14.09□□□□□ -0.15
PTPN2-201ENST00000309660 SSH3Q8TE77 659 aa14.09□□□□□ -0.15
PTPN2-201ENST00000309660 TPRNQ4KMQ1 711 aa14.08□□□□□ -0.16
PTPN2-201ENST00000309660 GIGYF1O75420 1035 aaPredicted RBP14.07□□□□□ -0.16
PTPN2-201ENST00000309660 BAG4O95429 457 aaKnown RBP14.07□□□□□ -0.16
PTPN2-201ENST00000309660 LTN1O94822 1766 aa14.07□□□□□ -0.16
PTPN2-201ENST00000309660 PXDNQ92626 1479 aa14.07□□□□□ -0.16
PTPN2-201ENST00000309660 KIF1BPQ96EK5 621 aa14.07□□□□□ -0.16
PTPN2-201ENST00000309660 SIL1Q9H173 461 aa14.07□□□□□ -0.16
PTPN2-201ENST00000309660 IL25Q9H293 177 aa14.07□□□□□ -0.16
PTPN2-201ENST00000309660 CWC27Q6UX04 472 aaKnown RBP14.07□□□□□ -0.16
PTPN2-201ENST00000309660 JARID2Q92833 1246 aaPredicted RBP14.07□□□□□ -0.16
PTPN2-201ENST00000309660 RIC3Q7Z5B4 369 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 NFATC2IPQ8NCF5 419 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 LARP6Q9BRS8 491 aaKnown RBP14.06□□□□□ -0.16
PTPN2-201ENST00000309660 C19orf44Q9H6X5 657 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 SALL3Q9BXA9 1300 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 CHMP4AQ9BY43 222 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 NUCB2P80303 420 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 AK9Q5TCS8 1911 aa14.06□□□□□ -0.16
PTPN2-201ENST00000309660 NFAT5O94916 1531 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 TMX3Q96JJ7 454 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 ADCY9O60503 1353 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 RAB11FIP3O75154 756 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 CLASRPQ8N2M8 674 aaKnown RBP14.05□□□□□ -0.16
PTPN2-201ENST00000309660 SPG7Q9UQ90 795 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 HOXB7P09629 217 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 GRPEL1Q9HAV7 217 aa14.05□□□□□ -0.16
PTPN2-201ENST00000309660 MARF1Q9Y4F3 1742 aaKnown RBP14.04□□□□□ -0.16
PTPN2-201ENST00000309660 KSR2Q6VAB6 950 aa14.04□□□□□ -0.16
PTPN2-201ENST00000309660 ERBB3P21860 1342 aa14.04□□□□□ -0.16
PTPN2-201ENST00000309660 IFIT2P09913 472 aaKnown RBP14.04□□□□□ -0.16
PTPN2-201ENST00000309660 TATP17735 454 aaPredicted RBP14.04□□□□□ -0.16
PTPN2-201ENST00000309660 KIAA1211Q6ZU35 1233 aa14.04□□□□□ -0.16
PTPN2-201ENST00000309660 STAP2Q9UGK3 403 aa14.04□□□□□ -0.16
PTPN2-201ENST00000309660 CHD2O14647 1828 aaKnown RBP14.04□□□□□ -0.16
PTPN2-201ENST00000309660 DTNBO60941 627 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 PRPF40AO75400 957 aaKnown RBP14.03□□□□□ -0.16
PTPN2-201ENST00000309660 FAM208AQ9UK61 1670 aaKnown RBP14.03□□□□□ -0.16
PTPN2-201ENST00000309660 POLA2Q14181 598 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 SKOR2Q2VWA4 1001 aaPredicted RBP14.03□□□□□ -0.16
PTPN2-201ENST00000309660 GAS2L3Q86XJ1 694 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 CNTROBQ8N137 903 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 KLHDC4Q8TBB5 520 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.03□□□□□ -0.16
PTPN2-201ENST00000309660 RGPD2P0DJD1 1756 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 DDX58O95786 925 aaKnown RBP14.03□□□□□ -0.16
PTPN2-201ENST00000309660 MRE11P49959 708 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 HSPA2P54652 639 aa14.03□□□□□ -0.16
PTPN2-201ENST00000309660 CAVIN1Q6NZI2 390 aaKnown RBP14.03□□□□□ -0.16
PTPN2-201ENST00000309660 FSD2A1L4K1 749 aa14.02□□□□□ -0.16
PTPN2-201ENST00000309660 AACSQ86V21 672 aa14.02□□□□□ -0.16
PTPN2-201ENST00000309660 DDX54Q8TDD1 881 aaKnown RBP14.02□□□□□ -0.16
PTPN2-201ENST00000309660 DIAPH3Q9NSV4 1193 aa14.02□□□□□ -0.16
PTPN2-201ENST00000309660 LRRC37A3O60309 1634 aa14.02□□□□□ -0.17
PTPN2-201ENST00000309660 HSP90AB4PQ58FF6 505 aa14.02□□□□□ -0.17
PTPN2-201ENST00000309660 ZNF790Q6PG37 636 aa14.02□□□□□ -0.17
PTPN2-201ENST00000309660 CCDC8Q9H0W5 538 aaPredicted RBP14.02□□□□□ -0.17
PTPN2-201ENST00000309660 TTC5Q8N0Z6 440 aa14.02□□□□□ -0.17
PTPN2-201ENST00000309660 PI4K2BQ8TCG2 481 aa14.02□□□□□ -0.17
PTPN2-201ENST00000309660 CCDC9Q9Y3X0 531 aaKnown RBP14.02□□□□□ -0.17
PTPN2-201ENST00000309660 CWC22Q9HCG8 908 aaKnown RBP14.01□□□□□ -0.17
PTPN2-201ENST00000309660 HYPKQ9NX55 129 aa14.01□□□□□ -0.17
PTPN2-201ENST00000309660 GRM8O00222 908 aa14.01□□□□□ -0.17
PTPN2-201ENST00000309660 COPS6Q7L5N1 327 aa14.01□□□□□ -0.17
PTPN2-201ENST00000309660 XAGE3Q8WTP9 111 aa14.01□□□□□ -0.17
PTPN2-201ENST00000309660 SUCLG2Q96I99 432 aa14.01□□□□□ -0.17
PTPN2-201ENST00000309660 BICC1Q9H694 974 aaKnown RBP14.01□□□□□ -0.17
PTPN2-201ENST00000309660 NEXNQ0ZGT2 675 aa14□□□□□ -0.17
PTPN2-201ENST00000309660 ZNF496Q96IT1 587 aaPredicted RBP14□□□□□ -0.17
PTPN2-201ENST00000309660 MYD88Q99836 296 aa14□□□□□ -0.17
PTPN2-201ENST00000309660 CPA1P15085 419 aa14□□□□□ -0.17
PTPN2-201ENST00000309660 G3BP1Q13283 466 aaKnown RBP eCLIP14□□□□□ -0.17
PTPN2-201ENST00000309660 TMEM94Q12767 1356 aa14□□□□□ -0.17
PTPN2-201ENST00000309660 KCNJ4P48050 445 aa14□□□□□ -0.17
PTPN2-201ENST00000309660 DDX21Q9NR30 783 aaKnown RBP eCLIP14□□□□□ -0.17
PTPN2-201ENST00000309660 C1orf167Q5SNV9 1468 aa14□□□□□ -0.17
PTPN2-201ENST00000309660 LINS1Q8NG48 757 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 NPHP3Q7Z494 1330 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 PTMSP20962 102 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 USP16Q9Y5T5 823 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 PXDNLA1KZ92 1463 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 ATP5J2-PTCD1G3V325 749 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 PTCD1O75127 700 aaKnown RBP13.99□□□□□ -0.17
PTPN2-201ENST00000309660 ALDH1L1O75891 902 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 GLRX3O76003 335 aaKnown RBP13.99□□□□□ -0.17
PTPN2-201ENST00000309660 GPATCH3Q96I76 525 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 SLC52A2Q9HAB3 445 aa13.99□□□□□ -0.17
PTPN2-201ENST00000309660 RBM27Q9P2N5 1060 aaKnown RBP13.98□□□□□ -0.17
PTPN2-201ENST00000309660 PHKG2P15735 406 aa13.98□□□□□ -0.17
PTPN2-201ENST00000309660 ECHDC1Q9NTX5 307 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 1811 ms