RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 EXOC6BQ9Y2D4 811 aa11.17□□□□□ -0.62
PTPRE-202ENST00000306042 PRR36Q9H6K5 1346 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 SYNMO15061 1565 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 ANKRD18AQ8IVF6 992 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 KIF1BPQ96EK5 621 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 LRRFIP2Q9Y608 721 aaKnown RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 NKTRP30414 1462 aaKnown RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 AFF2P51816 1311 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 SF3A1Q15459 793 aaKnown RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 SLC52A2Q9HAB3 445 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 PER1O15534 1290 aaPredicted RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 DZIP1Q86YF9 867 aaKnown RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 PAXIP1Q6ZW49 1069 aaPredicted RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 SLKQ9H2G2 1235 aaPredicted RBP11.16□□□□□ -0.62
PTPRE-202ENST00000306042 FOXD4L1Q9NU39 408 aa11.16□□□□□ -0.62
PTPRE-202ENST00000306042 PLA2R1Q13018 1463 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 JARID2Q92833 1246 aaPredicted RBP11.15□□□□□ -0.62
PTPRE-202ENST00000306042 USP6P35125 1406 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 ANKARQ7Z5J8 1434 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 SLC4A3P48751 1232 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 KSR2Q6VAB6 950 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 ERVV-2B6SEH9 535 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 SEPT12Q8IYM1 358 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 RNF17Q9BXT8 1623 aaKnown RBP11.15□□□□□ -0.62
PTPRE-202ENST00000306042 NPC1L1Q9UHC9 1359 aa11.15□□□□□ -0.62
PTPRE-202ENST00000306042 WDR17Q8IZU2 1322 aa11.15□□□□□ -0.63
PTPRE-202ENST00000306042 TRIM37O94972 964 aa11.15□□□□□ -0.63
PTPRE-202ENST00000306042 TTLL12Q14166 644 aaPredicted RBP11.15□□□□□ -0.63
PTPRE-202ENST00000306042 CCDC87Q9NVE4 849 aa11.15□□□□□ -0.63
PTPRE-202ENST00000306042 KDM4FA0A1W2PPD8 638 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 SLF2Q8IX21 1173 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 CNBD1Q8NA66 436 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 RIMS1Q86UR5 1692 aaKnown RBP11.14□□□□□ -0.63
PTPRE-202ENST00000306042 JCADQ9P266 1359 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 RAB11FIP3O75154 756 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 MCTP1Q6DN14 999 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 PDZRN3Q9UPQ7 1066 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 ABCA6Q8N139 1617 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 INSRP06213 1382 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 HSPA1LP34931 641 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 GBP4Q96PP9 640 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 LGR6Q9HBX8 967 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 PSMA5P28066 241 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 TDO2P48775 406 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 FLAD1Q8NFF5 587 aa11.14□□□□□ -0.63
PTPRE-202ENST00000306042 PTMAP06454 111 aaKnown RBP11.13□□□□□ -0.63
PTPRE-202ENST00000306042 C8orf58Q8NAV2 365 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 AIDAQ96BJ3 306 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 JDP2Q8WYK2 163 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 MAP4K4O95819 1239 aaPredicted RBP11.13□□□□□ -0.63
PTPRE-202ENST00000306042 STK11IPQ8N1F8 1099 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 ATP7BP35670 1465 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 DNAJC10Q8IXB1 793 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 CEP152O94986 1710 aa11.13□□□□□ -0.63
PTPRE-202ENST00000306042 CAMSAP1Q5T5Y3 1602 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 CSPP1Q1MSJ5 1256 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 FAM182BQ5T319 152 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 INO80Q9ULG1 1556 aaPredicted RBP11.12□□□□□ -0.63
PTPRE-202ENST00000306042 PHKG2P15735 406 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 USP5P45974 858 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 CRACR2BQ8N4Y2 399 aaPredicted RBP11.12□□□□□ -0.63
PTPRE-202ENST00000306042 UNC13BO14795 1591 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 ALDH1L1O75891 902 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 MAP3K12Q12852 859 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 NUTM1Q86Y26 1132 aa11.12□□□□□ -0.63
PTPRE-202ENST00000306042 DDX21Q9NR30 783 aaKnown RBP eCLIP11.12□□□□□ -0.63
PTPRE-202ENST00000306042 GOLGA6L6A8MZA4 724 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 TRIM27P14373 513 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 RBM6P78332 1123 aaKnown RBP11.11□□□□□ -0.63
PTPRE-202ENST00000306042 BEGAINQ9BUH8 593 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 BABAM1Q9NWV8 329 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 NOP58Q9Y2X3 529 aaKnown RBP11.11□□□□□ -0.63
PTPRE-202ENST00000306042 CLTCL1P53675 1640 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 PDE4AP27815 886 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 SAFBQ15424 915 aaKnown RBP eCLIP11.11□□□□□ -0.63
PTPRE-202ENST00000306042 LINS1Q8NG48 757 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 THRAP3Q9Y2W1 955 aaKnown RBP11.11□□□□□ -0.63
PTPRE-202ENST00000306042 LMTK2Q8IWU2 1503 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 GRM8O00222 908 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 IRS4O14654 1257 aaPredicted RBP11.11□□□□□ -0.63
PTPRE-202ENST00000306042 PARP10Q53GL7 1025 aa11.11□□□□□ -0.63
PTPRE-202ENST00000306042 ZC3H12CQ9C0D7 883 aaKnown RBP11.11□□□□□ -0.63
PTPRE-202ENST00000306042 MYO1BO43795 1136 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 NSFL1CQ9UNZ2 370 aaKnown RBP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 KDM5AP29375 1690 aaKnown RBP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 LDHCP07864 332 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 CHD1LQ86WJ1 897 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 OGFOD1Q8N543 542 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 ERBB3P21860 1342 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 XBP1P17861 261 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 LMBR1LQ6UX01 489 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 CLEC11AQ9Y240 323 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 ALKQ9UM73 1620 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 SOS1Q07889 1333 aaPredicted RBP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 GLRX3O76003 335 aaKnown RBP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 A1BGP04217 495 aa11.1□□□□□ -0.63
PTPRE-202ENST00000306042 POLR3DP05423 398 aaPredicted RBP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 CCDC43Q96MW1 224 aaKnown RBP11.1□□□□□ -0.63
PTPRE-202ENST00000306042 CCDC8Q9H0W5 538 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms