RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ZNF592Q92610 1267 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 HNRNPMP52272 730 aaKnown RBP eCLIP6.09□□□□□ -1.43
SCN1A-201ENST00000303395 TRIM14Q14142 442 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 STX1AQ16623 288 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 CEP112Q8N8E3 955 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 SLC26A8Q96RN1 970 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 APBB1O00213 710 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 GNAI2P04899 355 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 ANKRD45Q5TZF3 282 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 FBXW7Q969H0 707 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 GZF1Q9H116 711 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-201ENST00000303395 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.09□□□□□ -1.43
SCN1A-201ENST00000303395 MSH6P52701 1360 aa6.09□□□□□ -1.44
SCN1A-201ENST00000303395 WDR62O43379 1518 aa6.09□□□□□ -1.44
SCN1A-201ENST00000303395 GLRX3O76003 335 aaKnown RBP6.09□□□□□ -1.44
SCN1A-201ENST00000303395 PRPHP41219 470 aa6.09□□□□□ -1.44
SCN1A-201ENST00000303395 PIP4K2BP78356 416 aa6.09□□□□□ -1.44
SCN1A-201ENST00000303395 WASHC4Q2M389 1173 aa6.09□□□□□ -1.44
SCN1A-201ENST00000303395 SAMD9LQ8IVG5 1584 aa6.09□□□□□ -1.44
SCN1A-201ENST00000303395 ARHGEF11O15085 1522 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 ARHGAP25P42331 645 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 ERO1AQ96HE7 468 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 TTC14Q96N46 770 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 BICRAQ9NZM4 1560 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 SOX12O15370 315 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 KCNJ6P48051 423 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 B4GALNT4Q76KP1 1039 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 PODNQ7Z5L7 613 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 P3H4Q92791 437 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 A0A1B0GUA9 196 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 HOXB7P09629 217 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 NOP2P46087 812 aaKnown RBP6.08□□□□□ -1.44
SCN1A-201ENST00000303395 DNAJC21Q5F1R6 531 aaKnown RBP6.08□□□□□ -1.44
SCN1A-201ENST00000303395 MCTP1Q6DN14 999 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 IFI16Q16666 785 aaKnown RBP6.08□□□□□ -1.44
SCN1A-201ENST00000303395 SPECC1LQ69YQ0 1117 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 GIMAP7Q8NHV1 300 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 BBXQ8WY36 941 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-201ENST00000303395 CRACR2AQ9BSW2 395 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 WDHD1O75717 1129 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-201ENST00000303395 AIMP1Q12904 312 aaKnown RBP6.08□□□□□ -1.44
SCN1A-201ENST00000303395 PPP2R5BQ15173 497 aa6.08□□□□□ -1.44
SCN1A-201ENST00000303395 SPATA31E1Q6ZUB1 1445 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 TMCO5BA8MYB1 307 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 CASTP20810 708 aaKnown RBP6.07□□□□□ -1.44
SCN1A-201ENST00000303395 EFCC1Q9HA90 598 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 IFIT2P09913 472 aaKnown RBP6.07□□□□□ -1.44
SCN1A-201ENST00000303395 GBP1P32455 592 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 FAM114A1Q8IWE2 563 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 TNMDQ9H2S6 317 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 PDZRN3Q9UPQ7 1066 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 TTC41PQ6P2S7 1318 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 OPA1O60313 960 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 MYRIPQ8NFW9 859 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 TTC37Q6PGP7 1564 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 SLU7O95391 586 aaKnown RBP6.07□□□□□ -1.44
SCN1A-201ENST00000303395 RGL3Q3MIN7 710 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC178Q5BJE1 867 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 PPFIBP1Q86W92 1011 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 PIBF1Q8WXW3 757 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 CFAP74Q9C0B2 1584 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 DRC1Q96MC2 740 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 KIF5CO60282 957 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 BUB1BO60566 1050 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-201ENST00000303395 SDF4Q9BRK5 362 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 COG6Q9Y2V7 657 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 FAM135BQ49AJ0 1406 aa6.07□□□□□ -1.44
SCN1A-201ENST00000303395 PRDM15P57071 1507 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-201ENST00000303395 IKQ13123 557 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 G3BP1Q13283 466 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 RBM26Q5T8P6 1007 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 JPH4Q96JJ6 628 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 MPHOSPH8Q99549 860 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 MAST1Q9Y2H9 1570 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 APAF1O14727 1248 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 TRAF1Q13077 416 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 LRRCC1Q9C099 1032 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 MED4Q9NPJ6 270 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 SEPT6Q14141 434 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 GBP6Q6ZN66 633 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 RALYLQ86SE5 291 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 VPS36Q86VN1 386 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 NSRP1Q9H0G5 558 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 SSX2IPQ9Y2D8 614 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 SAMD1Q6SPF0 538 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 TRIM22Q8IYM9 498 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 FAM177A1Q8N128 213 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 TCP11L2Q8N4U5 519 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 TDRD9Q8NDG6 1382 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 LIG1P18858 919 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 TAX1BP1Q86VP1 789 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC51Q96ER9 411 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 ARFGAP3Q9NP61 516 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 MYO1AQ9UBC5 1043 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 LIMCH1Q9UPQ0 1083 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 FSD2A1L4K1 749 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC102AQ96A19 550 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 RBM33Q96EV2 1170 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms