RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 CACNA1FO60840 1977 aa26.96■■□□□ 1.91
TPM4-201ENST00000300933 KIF1AQ12756 1690 aa26.96■■□□□ 1.91
TPM4-201ENST00000300933 ALS2Q96Q42 1657 aa26.96■■□□□ 1.91
TPM4-201ENST00000300933 HOXB7P09629 217 aa26.95■■□□□ 1.91
TPM4-201ENST00000300933 ZNF335Q9H4Z2 1342 aaPredicted RBP26.95■■□□□ 1.9
TPM4-201ENST00000300933 PHKG2P15735 406 aa26.95■■□□□ 1.9
TPM4-201ENST00000300933 KDM3BQ7LBC6 1761 aa26.95■■□□□ 1.9
TPM4-201ENST00000300933 SPATA31A3Q5VYP0 1347 aa26.95■■□□□ 1.9
TPM4-201ENST00000300933 MEGF6O75095 1541 aa26.94■■□□□ 1.9
TPM4-201ENST00000300933 ZNF790Q6PG37 636 aa26.94■■□□□ 1.9
TPM4-201ENST00000300933 RILPL2Q969X0 211 aa26.94■■□□□ 1.9
TPM4-201ENST00000300933 CYP27B1O15528 508 aa26.93■■□□□ 1.9
TPM4-201ENST00000300933 MAP4K4O95819 1239 aaPredicted RBP26.93■■□□□ 1.9
TPM4-201ENST00000300933 HSP90AB1P08238 724 aaKnown RBP26.93■■□□□ 1.9
TPM4-201ENST00000300933 MX1P20591 662 aa26.93■■□□□ 1.9
TPM4-201ENST00000300933 IBTKQ9P2D0 1353 aaPredicted RBP26.93■■□□□ 1.9
TPM4-201ENST00000300933 TRIM6-TRIM34B2RNG4 842 aa26.93■■□□□ 1.9
TPM4-201ENST00000300933 USP26Q9BXU7 913 aa26.93■■□□□ 1.9
TPM4-201ENST00000300933 FSD2A1L4K1 749 aa26.92■■□□□ 1.9
TPM4-201ENST00000300933 SLC52A2Q9HAB3 445 aa26.92■■□□□ 1.9
TPM4-201ENST00000300933 UNC5CLQ8IV45 518 aa26.92■■□□□ 1.9
TPM4-201ENST00000300933 SSH3Q8TE77 659 aa26.92■■□□□ 1.9
TPM4-201ENST00000300933 SPG7Q9UQ90 795 aa26.91■■□□□ 1.9
TPM4-201ENST00000300933 ZNF496Q96IT1 587 aaPredicted RBP26.91■■□□□ 1.9
TPM4-201ENST00000300933 C9orf78Q9NZ63 289 aaPredicted RBP26.91■■□□□ 1.9
TPM4-201ENST00000300933 KDM6AO15550 1401 aaPredicted RBP26.91■■□□□ 1.9
TPM4-201ENST00000300933 TNS3Q68CZ2 1445 aa26.91■■□□□ 1.9
TPM4-201ENST00000300933 TRAK2O60296 914 aa26.9■■□□□ 1.9
TPM4-201ENST00000300933 KDM4FA0A1W2PPD8 638 aa26.89■■□□□ 1.89
TPM4-201ENST00000300933 PDIA6Q15084 440 aa26.89■■□□□ 1.89
TPM4-201ENST00000300933 SALL3Q9BXA9 1300 aa26.89■■□□□ 1.89
TPM4-201ENST00000300933 KSR2Q6VAB6 950 aa26.88■■□□□ 1.89
TPM4-201ENST00000300933 IFNL2Q8IZJ0 200 aa26.88■■□□□ 1.89
TPM4-201ENST00000300933 PRDM11Q9NQV5 511 aa26.88■■□□□ 1.89
TPM4-201ENST00000300933 USP16Q9Y5T5 823 aa26.88■■□□□ 1.89
TPM4-201ENST00000300933 HSP90AA1P07900 732 aaKnown RBP26.88■■□□□ 1.89
TPM4-201ENST00000300933 OSBPL3Q9H4L5 887 aa26.88■■□□□ 1.89
TPM4-201ENST00000300933 CASC1Q6TDU7 716 aa26.87■■□□□ 1.89
TPM4-201ENST00000300933 JARID2Q92833 1246 aaPredicted RBP26.87■■□□□ 1.89
TPM4-201ENST00000300933 SNX21Q969T3 373 aa26.87■■□□□ 1.89
TPM4-201ENST00000300933 SLAIN2Q9P270 581 aa26.87■■□□□ 1.89
TPM4-201ENST00000300933 PA2G4Q9UQ80 394 aaKnown RBP26.87■■□□□ 1.89
TPM4-201ENST00000300933 HEG1Q9ULI3 1381 aa26.87■■□□□ 1.89
TPM4-201ENST00000300933 PXDNLA1KZ92 1463 aa26.86■■□□□ 1.89
TPM4-201ENST00000300933 DCCP43146 1447 aa26.85■■□□□ 1.89
TPM4-201ENST00000300933 CLCN1P35523 988 aa26.85■■□□□ 1.89
TPM4-201ENST00000300933 RHPN1Q8TCX5 695 aa26.85■■□□□ 1.89
TPM4-201ENST00000300933 CHMP5Q9NZZ3 219 aa26.85■■□□□ 1.89
TPM4-201ENST00000300933 POLA2Q14181 598 aa26.85■■□□□ 1.89
TPM4-201ENST00000300933 TOM1L2Q6ZVM7 507 aa26.84■■□□□ 1.89
TPM4-201ENST00000300933 OS9Q13438 667 aaPredicted RBP26.84■■□□□ 1.89
TPM4-201ENST00000300933 DDX21Q9NR30 783 aaKnown RBP eCLIP26.84■■□□□ 1.894e-7■■□□□ 12.4
TPM4-201ENST00000300933 STRN4Q9NRL3 753 aa26.84■■□□□ 1.89
TPM4-201ENST00000300933 HYPKQ9NX55 129 aa26.84■■□□□ 1.89
TPM4-201ENST00000300933 RIC3Q7Z5B4 369 aa26.83■■□□□ 1.89
TPM4-201ENST00000300933 XAGE3Q8WTP9 111 aa26.83■■□□□ 1.89
TPM4-201ENST00000300933 ERC2O15083 957 aa26.83■■□□□ 1.88
TPM4-201ENST00000300933 COPS6Q7L5N1 327 aa26.83■■□□□ 1.88
TPM4-201ENST00000300933 CHMP4AQ9BY43 222 aa26.82■■□□□ 1.88
TPM4-201ENST00000300933 K7ELQ4 463 aaPredicted RBP26.82■■□□□ 1.88
TPM4-201ENST00000300933 CAMTA1Q9Y6Y1 1673 aa26.82■■□□□ 1.88
TPM4-201ENST00000300933 COL18A1P39060 1754 aa26.81■■□□□ 1.88
TPM4-201ENST00000300933 TTC5Q8N0Z6 440 aa26.81■■□□□ 1.88
TPM4-201ENST00000300933 CABP4P57796 275 aa26.81■■□□□ 1.88
TPM4-201ENST00000300933 IL25Q9H293 177 aa26.8■■□□□ 1.88
TPM4-201ENST00000300933 DCAF5Q96JK2 942 aa26.8■■□□□ 1.88
TPM4-201ENST00000300933 MRE11P49959 708 aa26.79■■□□□ 1.88
TPM4-201ENST00000300933 DDX54Q8TDD1 881 aaKnown RBP26.79■■□□□ 1.88
TPM4-201ENST00000300933 SUCLG2Q96I99 432 aa26.79■■□□□ 1.88
TPM4-201ENST00000300933 IGKV5-2P06315 115 aa26.79■■□□□ 1.88
TPM4-201ENST00000300933 KLHDC4Q8TBB5 520 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 KAZALD1Q96I82 304 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.78■■□□□ 1.88
TPM4-201ENST00000300933 XIRP1Q702N8 1843 aaKnown RBP26.78■■□□□ 1.88
TPM4-201ENST00000300933 OVOS2A0A0G2JMS6 1433 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 NCOA3Q9Y6Q9 1424 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 REC8O95072 547 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 CHMLP26374 656 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 GLIPR1L2Q4G1C9 344 aa26.78■■□□□ 1.88
TPM4-201ENST00000300933 HSP90AA2PQ14568 343 aaPredicted RBP26.77■■□□□ 1.88
TPM4-201ENST00000300933 MYD88Q99836 296 aa26.77■■□□□ 1.88
TPM4-201ENST00000300933 BICC1Q9H694 974 aaKnown RBP26.77■■□□□ 1.88
TPM4-201ENST00000300933 GRPEL1Q9HAV7 217 aa26.77■■□□□ 1.88
TPM4-201ENST00000300933 ANO2Q9NQ90 1003 aa26.77■■□□□ 1.88
TPM4-201ENST00000300933 STAP2Q9UGK3 403 aa26.77■■□□□ 1.88
TPM4-201ENST00000300933 ESYT1Q9BSJ8 1104 aa26.77■■□□□ 1.88
TPM4-201ENST00000300933 GRM8O00222 908 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 VSIG10Q8N0Z9 540 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 LINS1Q8NG48 757 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 KIF1BPQ96EK5 621 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 SIL1Q9H173 461 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.76■■□□□ 1.873e-8■■□□□ 13.5
TPM4-201ENST00000300933 RAB11FIP3O75154 756 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 DDX58O95786 925 aaKnown RBP26.76■■□□□ 1.87
TPM4-201ENST00000300933 DDIT3P35638 169 aa26.76■■□□□ 1.87
TPM4-201ENST00000300933 SIPA1L3O60292 1781 aaPredicted RBP26.76■■□□□ 1.87
TPM4-201ENST00000300933 ALDH1L1O75891 902 aa26.75■■□□□ 1.87
TPM4-201ENST00000300933 RABEP1Q15276 862 aa26.75■■□□□ 1.87
TPM4-201ENST00000300933 PALD1Q9ULE6 856 aa26.74■■□□□ 1.87
TPM4-201ENST00000300933 ATP5J2-PTCD1G3V325 749 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 454.4 ms