RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 NBPF4Q96M43 638 aa29.61■■■□□ 2.33
SPTSSA-201ENST00000298130 SPG7Q9UQ90 795 aa29.61■■■□□ 2.33
SPTSSA-201ENST00000298130 PIK3C2AO00443 1686 aa29.61■■■□□ 2.33
SPTSSA-201ENST00000298130 SSH3Q8TE77 659 aa29.61■■■□□ 2.33
SPTSSA-201ENST00000298130 LRRC59Q96AG4 307 aaKnown RBP29.61■■■□□ 2.33
SPTSSA-201ENST00000298130 DIP2AQ14689 1571 aa29.6■■■□□ 2.33
SPTSSA-201ENST00000298130 CUL4AQ13619 759 aa29.6■■■□□ 2.33
SPTSSA-201ENST00000298130 CWC27Q6UX04 472 aaKnown RBP29.6■■■□□ 2.33
SPTSSA-201ENST00000298130 DDX54Q8TDD1 881 aaKnown RBP29.6■■■□□ 2.33
SPTSSA-201ENST00000298130 MSNP26038 577 aaKnown RBP29.59■■■□□ 2.33
SPTSSA-201ENST00000298130 MPRIPQ6WCQ1 1025 aa29.59■■■□□ 2.33
SPTSSA-201ENST00000298130 MPNDQ8N594 471 aa29.58■■■□□ 2.33
SPTSSA-201ENST00000298130 PI4K2BQ8TCG2 481 aa29.58■■■□□ 2.33
SPTSSA-201ENST00000298130 RASEFQ8IZ41 740 aa29.58■■■□□ 2.33
SPTSSA-201ENST00000298130 LRSAM1Q6UWE0 723 aa29.57■■■□□ 2.32
SPTSSA-201ENST00000298130 OS9Q13438 667 aaPredicted RBP29.57■■■□□ 2.32
SPTSSA-201ENST00000298130 MCM2P49736 904 aa29.56■■■□□ 2.32
SPTSSA-201ENST00000298130 XRN1Q8IZH2 1706 aaKnown RBP29.55■■■□□ 2.32
SPTSSA-201ENST00000298130 EIF4A1P60842 406 aaKnown RBP29.55■■■□□ 2.32
SPTSSA-201ENST00000298130 XPCQ01831 940 aaPredicted RBP29.55■■■□□ 2.32
SPTSSA-201ENST00000298130 HSPA4P34932 840 aa29.54■■■□□ 2.32
SPTSSA-201ENST00000298130 ANAPC15P60006 121 aa29.54■■■□□ 2.32
SPTSSA-201ENST00000298130 KIAA1211Q6ZU35 1233 aa29.54■■■□□ 2.32
SPTSSA-201ENST00000298130 NWD1Q149M9 1564 aa29.54■■■□□ 2.32
SPTSSA-201ENST00000298130 PA2G4Q9UQ80 394 aaKnown RBP29.54■■■□□ 2.32
SPTSSA-201ENST00000298130 PRAMEF22A3QJZ6 481 aa29.53■■■□□ 2.32
SPTSSA-201ENST00000298130 DNAAF4Q8WXU2 420 aa29.53■■■□□ 2.32
SPTSSA-201ENST00000298130 FAM208AQ9UK61 1670 aaKnown RBP29.53■■■□□ 2.32
SPTSSA-201ENST00000298130 SNX14Q9Y5W7 946 aa29.52■■■□□ 2.32
SPTSSA-201ENST00000298130 POLA2Q14181 598 aa29.52■■■□□ 2.32
SPTSSA-201ENST00000298130 BEND3Q5T5X7 828 aa29.52■■■□□ 2.32
SPTSSA-201ENST00000298130 USP48Q86UV5 1035 aa29.52■■■□□ 2.32
SPTSSA-201ENST00000298130 EIF2AK3Q9NZJ5 1116 aaKnown RBP29.52■■■□□ 2.32
SPTSSA-201ENST00000298130 SGSM2O43147 1006 aa29.51■■■□□ 2.31
SPTSSA-201ENST00000298130 PROSER3Q2NL68 480 aa29.51■■■□□ 2.31
SPTSSA-201ENST00000298130 BTBD11A6QL63 1104 aa29.5■■■□□ 2.31
SPTSSA-201ENST00000298130 AK2P54819 239 aa29.5■■■□□ 2.31
SPTSSA-201ENST00000298130 KIF1BPQ96EK5 621 aa29.5■■■□□ 2.31
SPTSSA-201ENST00000298130 THEMISQ8N1K5 641 aaPredicted RBP29.49■■■□□ 2.31
SPTSSA-201ENST00000298130 INTS4Q96HW7 963 aaKnown RBP29.49■■■□□ 2.31
SPTSSA-201ENST00000298130 TEFQ10587 303 aa29.49■■■□□ 2.31
SPTSSA-201ENST00000298130 LMOD2Q6P5Q4 547 aa29.49■■■□□ 2.31
SPTSSA-201ENST00000298130 CWF19L2Q2TBE0 894 aaKnown RBP29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 ZNF530Q6P9A1 599 aaPredicted RBP29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 PHF8Q9UPP1 1060 aa29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 CNPY2Q9Y2B0 182 aa29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 KIF13AQ9H1H9 1805 aa29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 PDLIM2Q96JY6 352 aa29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 LSG1Q9H089 658 aaKnown RBP29.48■■■□□ 2.31
SPTSSA-201ENST00000298130 RAB11FIP3O75154 756 aa29.47■■■□□ 2.31
SPTSSA-201ENST00000298130 LARGE1O95461 756 aa29.47■■■□□ 2.31
SPTSSA-201ENST00000298130 MBD3O95983 291 aa29.47■■■□□ 2.31
SPTSSA-201ENST00000298130 RAD50Q92878 1312 aa29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 HSP90AA2PQ14568 343 aaPredicted RBP29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 CNTROBQ8N137 903 aa29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 PTH1RQ03431 593 aa29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 ESCO1Q5FWF5 840 aa29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 RUFY3Q7L099 469 aa29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.46■■■□□ 2.31
SPTSSA-201ENST00000298130 CASTP20810 708 aaKnown RBP29.45■■■□□ 2.3
SPTSSA-201ENST00000298130 MAP3K2Q9Y2U5 619 aa29.45■■■□□ 2.3
SPTSSA-201ENST00000298130 R3HCC1Q9Y3T6 440 aaKnown RBP29.45■■■□□ 2.3
SPTSSA-201ENST00000298130 IP6K1Q92551 441 aa29.44■■■□□ 2.3
SPTSSA-201ENST00000298130 C9orf78Q9NZ63 289 aaPredicted RBP29.44■■■□□ 2.3
SPTSSA-201ENST00000298130 LRRC37A3O60309 1634 aa29.44■■■□□ 2.3
SPTSSA-201ENST00000298130 TUBGCP6Q96RT7 1819 aa29.44■■■□□ 2.3
SPTSSA-201ENST00000298130 AIMP1Q12904 312 aaKnown RBP29.44■■■□□ 2.3
SPTSSA-201ENST00000298130 ADCK5Q3MIX3 580 aa29.44■■■□□ 2.3
SPTSSA-201ENST00000298130 RPAP1Q9BWH6 1393 aaPredicted RBP29.43■■■□□ 2.3
SPTSSA-201ENST00000298130 PSME1Q06323 249 aa29.43■■■□□ 2.3
SPTSSA-201ENST00000298130 COL9A3Q14050 684 aaPredicted RBP29.43■■■□□ 2.3
SPTSSA-201ENST00000298130 ADCY9O60503 1353 aa29.43■■■□□ 2.3
SPTSSA-201ENST00000298130 PRPF40BQ6NWY9 871 aaKnown RBP29.42■■■□□ 2.3
SPTSSA-201ENST00000298130 TSPY26PQ9H489 355 aa29.42■■■□□ 2.3
SPTSSA-201ENST00000298130 NOL7Q9UMY1 257 aaKnown RBP29.42■■■□□ 2.3
SPTSSA-201ENST00000298130 DIAPH3Q9NSV4 1193 aa29.42■■■□□ 2.3
SPTSSA-201ENST00000298130 AOX1Q06278 1338 aa29.42■■■□□ 2.3
SPTSSA-201ENST00000298130 WDR33Q9C0J8 1336 aaKnown RBP29.42■■■□□ 2.3
SPTSSA-201ENST00000298130 UBE2Q2Q8WVN8 375 aa29.41■■■□□ 2.3
SPTSSA-201ENST00000298130 CEMIPQ8WUJ3 1361 aa29.41■■■□□ 2.3
SPTSSA-201ENST00000298130 FIBPO43427 364 aa29.41■■■□□ 2.3
SPTSSA-201ENST00000298130 CCDC83Q8IWF9 413 aa29.41■■■□□ 2.3
SPTSSA-201ENST00000298130 TTC14Q96N46 770 aa29.41■■■□□ 2.3
SPTSSA-201ENST00000298130 OFD1O75665 1012 aa29.4■■■□□ 2.3
SPTSSA-201ENST00000298130 SYT1P21579 422 aa29.4■■■□□ 2.3
SPTSSA-201ENST00000298130 BABAM1Q9NWV8 329 aa29.39■■■□□ 2.3
SPTSSA-201ENST00000298130 JAKMIP1Q96N16 626 aaKnown RBP29.39■■■□□ 2.29
SPTSSA-201ENST00000298130 SIL1Q9H173 461 aa29.38■■■□□ 2.29
SPTSSA-201ENST00000298130 RBM10P98175 930 aaKnown RBP29.38■■■□□ 2.29
SPTSSA-201ENST00000298130 CLASRPQ8N2M8 674 aaKnown RBP29.38■■■□□ 2.29
SPTSSA-201ENST00000298130 TCHHQ07283 1943 aa29.38■■■□□ 2.29
SPTSSA-201ENST00000298130 PTMAP06454 111 aaKnown RBP29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 KLHDC4Q8TBB5 520 aa29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 CCDC8Q9H0W5 538 aaPredicted RBP29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 AACSQ86V21 672 aa29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 NECAB1Q8N987 351 aa29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 TCEANC2Q96MN5 208 aa29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 LIMCH1Q9UPQ0 1083 aa29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 PXDNLA1KZ92 1463 aa29.37■■■□□ 2.29
SPTSSA-201ENST00000298130 ARHGAP23Q9P227 1491 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms