RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CCDC61Q9Y6R9 512 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 GNAT3A8MTJ3 354 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 WWC2Q6AWC2 1192 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 TAF4BQ92750 862 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 PDRG1Q9NUG6 133 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 TRAPPC8Q9Y2L5 1435 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 SAMD9LQ8IVG5 1584 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 SYCE3A1L190 88 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 PPP6R1Q9UPN7 881 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 ZFP91Q96JP5 570 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-201ENST00000295550 MBD5Q9P267 1494 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 LUZP1Q86V48 1076 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 PDCL3Q9H2J4 239 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 SRGAP3O43295 1099 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 TBC1D2BQ9UPU7 963 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 ABCA8O94911 1581 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 CASQ1P31415 396 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 NLRP2Q9NX02 1062 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 TRPM1Q7Z4N2 1603 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 KIF18AQ8NI77 898 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 SPATA32Q96LK8 384 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 THUMPD2Q9BTF0 503 aaKnown RBP11.5□□□□□ -0.57
COL6A3-201ENST00000295550 UPF3BQ9BZI7 483 aaKnown RBP11.5□□□□□ -0.57
COL6A3-201ENST00000295550 TTC22Q5TAA0 569 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 IQGAP3Q86VI3 1631 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 SFPQP23246 707 aaKnown RBP eCLIP11.5□□□□□ -0.57
COL6A3-201ENST00000295550 AACSQ86V21 672 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 TRERF1Q96PN7 1200 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 DNAJC2Q99543 621 aaKnown RBP11.5□□□□□ -0.57
COL6A3-201ENST00000295550 NUP62CLQ9H1M0 184 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 ASXL2Q76L83 1435 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 POLR3GO15318 223 aaPredicted RBP11.5□□□□□ -0.57
COL6A3-201ENST00000295550 CCDC113Q9H0I3 377 aa11.5□□□□□ -0.57
COL6A3-201ENST00000295550 CASTP20810 708 aaKnown RBP11.49□□□□□ -0.57
COL6A3-201ENST00000295550 KDM2BQ8NHM5 1336 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 ZNF530Q6P9A1 599 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-201ENST00000295550 TRIM22Q8IYM9 498 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 STAMBPO95630 424 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 PUS7Q96PZ0 661 aaKnown RBP11.49□□□□□ -0.57
COL6A3-201ENST00000295550 KRT32Q14532 448 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 IFFO1Q0D2I5 559 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 STK3Q13188 491 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 SH2B1Q9NRF2 756 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-201ENST00000295550 TRPM2O94759 1503 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 PTPN14Q15678 1187 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 MCM10Q7L590 875 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 CCDC183Q5T5S1 534 aa11.49□□□□□ -0.57
COL6A3-201ENST00000295550 MBIPQ9NS73 344 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 EVA1CP58658 441 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 LARP1BQ659C4 914 aaKnown RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 SYTL4Q96C24 671 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 ZMYM3Q14202 1370 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 MCM5P33992 734 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 MAP3K11Q16584 847 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 WASLO00401 505 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 PER1O15534 1290 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 KIF5CO60282 957 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 SSFA2P28290 1259 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 SSR1P43307 286 aaKnown RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 IMMTQ16891 758 aaKnown RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 PPP4R3BQ5MIZ7 849 aa11.48□□□□□ -0.57
COL6A3-201ENST00000295550 ZNF397Q8NF99 534 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-201ENST00000295550 ZHX3Q9H4I2 956 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 SETD1BQ9UPS6 1966 aaKnown RBP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 FILIP1Q7Z7B0 1213 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 SNX21Q969T3 373 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 TNNT1P13805 278 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 GTF2F1P35269 517 aaKnown RBP eCLIP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 CWC27Q6UX04 472 aaKnown RBP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 JAKMIP1Q96N16 626 aaKnown RBP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 EMILIN1Q9Y6C2 1016 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 TET3O43151 1660 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 CCDC175P0C221 793 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 KIF1BPQ96EK5 621 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 MAP4K4O95819 1239 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 SPHKAPQ2M3C7 1700 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 EIF5P55010 431 aaKnown RBP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 SMC1AQ14683 1233 aaKnown RBP11.47□□□□□ -0.57
COL6A3-201ENST00000295550 SMTNL1A8MU46 457 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 DESP17661 470 aa11.47□□□□□ -0.57
COL6A3-201ENST00000295550 BTBD11A6QL63 1104 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 KLHL40Q2TBA0 621 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 THEMISQ8N1K5 641 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-201ENST00000295550 GOPCQ9HD26 462 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 ZSCAN12O43309 604 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 CTR9Q6PD62 1173 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 NME9Q86XW9 330 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 EXOC6BQ9Y2D4 811 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 CFAP100Q494V2 611 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 TIGD1Q96MW7 591 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.46□□□□□ -0.57
COL6A3-201ENST00000295550 CHD1O14646 1710 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 ATF3P18847 181 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 BLOC1S2Q6QNY1 142 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 BCORL1Q5H9F3 1711 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 PPIP5K1Q6PFW1 1433 aa11.46□□□□□ -0.57
COL6A3-201ENST00000295550 CDKL5O76039 1030 aa11.46□□□□□ -0.58
COL6A3-201ENST00000295550 MNAT1P51948 309 aa11.46□□□□□ -0.58
COL6A3-201ENST00000295550 PCDHB15Q9Y5E8 787 aa11.46□□□□□ -0.58
COL6A3-201ENST00000295550 SPA17Q15506 151 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms