RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 TTF1Q15361 905 aaPredicted RBP14.95□□□□□ -0.02
PTCD1-201ENST00000292478 TANGO6Q9C0B7 1094 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 CCDC181Q5TID7 509 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 TBC1D9Q6ZT07 1266 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 C8orf76Q96K31 380 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 EIF3JO75822 258 aaKnown RBP14.94□□□□□ -0.02
PTCD1-201ENST00000292478 NUCB1Q02818 461 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 ZNF518AQ6AHZ1 1483 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 ZNF213O14771 459 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 PTCD1O75127 700 aaKnown RBP14.94□□□□□ -0.02
PTCD1-201ENST00000292478 TMEM132AQ24JP5 1023 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 TBC1D32Q96NH3 1257 aa14.94□□□□□ -0.02
PTCD1-201ENST00000292478 A0A087WZG4 1122 aa14.93□□□□□ -0.02
PTCD1-201ENST00000292478 SF3B2Q13435 895 aaKnown RBP14.93□□□□□ -0.02
PTCD1-201ENST00000292478 DDX19AQ9NUU7 478 aaKnown RBP14.93□□□□□ -0.02
PTCD1-201ENST00000292478 ABCF2Q9UG63 623 aa14.93□□□□□ -0.02
PTCD1-201ENST00000292478 ARHGEF12Q9NZN5 1544 aa14.93□□□□□ -0.02
PTCD1-201ENST00000292478 CCDC8Q9H0W5 538 aaPredicted RBP14.93□□□□□ -0.02
PTCD1-201ENST00000292478 CFAP43Q8NDM7 1665 aa14.93□□□□□ -0.02
PTCD1-201ENST00000292478 LEKR1Q6ZMV7 388 aa14.93□□□□□ -0.02
PTCD1-201ENST00000292478 KRT28Q7Z3Y7 464 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 MAP3K2Q9Y2U5 619 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 TEX14Q8IWB6 1497 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 TNPO1Q92973 898 aaKnown RBP14.92□□□□□ -0.02
PTCD1-201ENST00000292478 SYCP2Q9BX26 1530 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 RBM5P52756 815 aaKnown RBP eCLIP14.92□□□□□ -0.02
PTCD1-201ENST00000292478 ZPR1O75312 459 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 ZHX3Q9H4I2 956 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 GOLGA6L10A6NI86 522 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 FOXO3O43524 673 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 PDCL2Q8N4E4 241 aa14.92□□□□□ -0.02
PTCD1-201ENST00000292478 CTCFLQ8NI51 663 aaPredicted RBP14.92□□□□□ -0.02
PTCD1-201ENST00000292478 SEC63Q9UGP8 760 aaKnown RBP14.92□□□□□ -0.02
PTCD1-201ENST00000292478 IQCA1Q86XH1 822 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 CWC25Q9NXE8 425 aaPredicted RBP14.91□□□□□ -0.02
PTCD1-201ENST00000292478 TRMT112Q9UI30 125 aaKnown RBP14.91□□□□□ -0.02
PTCD1-201ENST00000292478 EPB41L2O43491 1005 aaKnown RBP14.91□□□□□ -0.02
PTCD1-201ENST00000292478 SLF2Q8IX21 1173 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 CCDC85AQ96PX6 553 aaPredicted RBP14.91□□□□□ -0.02
PTCD1-201ENST00000292478 TMOD2Q9NZR1 351 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 PIK3C2GO75747 1445 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 ZNF397Q8NF99 534 aaPredicted RBP14.91□□□□□ -0.02
PTCD1-201ENST00000292478 UHRF1BP1LA0JNW5 1464 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 ZSCAN12O43309 604 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 IGHDP01880 384 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 USP5P45974 858 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 FERMT3Q86UX7 667 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 SLC12A7Q9Y666 1083 aa14.91□□□□□ -0.02
PTCD1-201ENST00000292478 UQCRHLA0A096LP55 91 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 UQCRHP07919 91 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 CFAP100Q494V2 611 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 FILIP1Q7Z7B0 1213 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 PDCL3Q9H2J4 239 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.9□□□□□ -0.022e-9■■■■■ 237
PTCD1-201ENST00000292478 NEMFO60524 1076 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 SNRPA1P09661 255 aaKnown RBP14.9□□□□□ -0.02
PTCD1-201ENST00000292478 CAVIN2O95810 425 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 KIAA0556O60303 1618 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 SSFA2P28290 1259 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 SSRP1Q08945 709 aaKnown RBP14.9□□□□□ -0.02
PTCD1-201ENST00000292478 PPP1R42Q7Z4L9 355 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 ZSCAN29Q8IWY8 852 aaPredicted RBP14.9□□□□□ -0.02
PTCD1-201ENST00000292478 SFPQP23246 707 aaKnown RBP eCLIP14.9□□□□□ -0.02
PTCD1-201ENST00000292478 CNKSR2Q8WXI2 1034 aa14.9□□□□□ -0.02
PTCD1-201ENST00000292478 ZNF76P36508 570 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 AXDND1Q5T1B0 1012 aaPredicted RBP14.89□□□□□ -0.03
PTCD1-201ENST00000292478 BICDL1Q6ZP65 573 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 ALDH1L1O75891 902 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 POLR3DP05423 398 aaPredicted RBP14.89□□□□□ -0.03
PTCD1-201ENST00000292478 EIF5P55010 431 aaKnown RBP14.89□□□□□ -0.03
PTCD1-201ENST00000292478 MKNK2Q9HBH9 465 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 ZFYVE9O95405 1425 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 PATL2C9JE40 543 aaKnown RBP14.89□□□□□ -0.03
PTCD1-201ENST00000292478 ANAPC15P60006 121 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 PYM1Q9BRP8 204 aaKnown RBP14.89□□□□□ -0.03
PTCD1-201ENST00000292478 RAB34Q9BZG1 259 aa14.89□□□□□ -0.03
PTCD1-201ENST00000292478 PPIP5K1Q6PFW1 1433 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 ASXL2Q76L83 1435 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 WDR7Q9Y4E6 1490 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 WDR62O43379 1518 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 ANKRD44Q8N8A2 993 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 ANKRD24Q8TF21 1146 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 SPINK5Q9NQ38 1064 aaPredicted RBP14.88□□□□□ -0.03
PTCD1-201ENST00000292478 MINDY4BA8MYZ0 360 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 STX6O43752 255 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 CAMK4Q16566 473 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 UVSSAQ2YD98 709 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 PI4KAP2A4QPH2 592 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 H0YHG0 523 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 EXOC5O00471 708 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 FGFR1OPO95684 399 aaKnown RBP14.88□□□□□ -0.03
PTCD1-201ENST00000292478 SSBP05455 408 aaKnown RBP eCLIP14.88□□□□□ -0.03
PTCD1-201ENST00000292478 ARHGAP29Q52LW3 1261 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 DZIP1Q86YF9 867 aaKnown RBP14.88□□□□□ -0.03
PTCD1-201ENST00000292478 PI4KAP1Q8N8J0 262 aa14.88□□□□□ -0.03
PTCD1-201ENST00000292478 PPP1R12BO60237 982 aaPredicted RBP14.87□□□□□ -0.03
PTCD1-201ENST00000292478 MRPL50Q8N5N7 158 aaKnown RBP14.87□□□□□ -0.03
PTCD1-201ENST00000292478 GBP3Q9H0R5 595 aa14.87□□□□□ -0.03
PTCD1-201ENST00000292478 GOLGA8AA7E2F4 631 aa14.87□□□□□ -0.03
PTCD1-201ENST00000292478 GOLGA8BA8MQT2 603 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms