RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 DBF4Q9UBU7 674 aaPredicted RBP22.47■■□□□ 1.19
SHKBP1-201ENST00000291842 GIGYF1O75420 1035 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-201ENST00000291842 ANO2Q9NQ90 1003 aa22.46■■□□□ 1.19
SHKBP1-201ENST00000291842 ZGPATQ8N5A5 531 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-201ENST00000291842 RHPN1Q8TCX5 695 aa22.46■■□□□ 1.19
SHKBP1-201ENST00000291842 MAP3K2Q9Y2U5 619 aa22.46■■□□□ 1.19
SHKBP1-201ENST00000291842 PKP1Q13835 747 aa22.45■■□□□ 1.18
SHKBP1-201ENST00000291842 C1orf167Q5SNV9 1468 aa22.45■■□□□ 1.18
SHKBP1-201ENST00000291842 XRCC6P12956 609 aaKnown RBP eCLIP22.45■■□□□ 1.18
SHKBP1-201ENST00000291842 C19orf44Q9H6X5 657 aa22.45■■□□□ 1.18
SHKBP1-201ENST00000291842 PALD1Q9ULE6 856 aa22.45■■□□□ 1.18
SHKBP1-201ENST00000291842 FSD2A1L4K1 749 aa22.44■■□□□ 1.18
SHKBP1-201ENST00000291842 NEK4P51957 841 aa22.44■■□□□ 1.18
SHKBP1-201ENST00000291842 IL25Q9H293 177 aa22.43■■□□□ 1.18
SHKBP1-201ENST00000291842 TUBGCP6Q96RT7 1819 aa22.43■■□□□ 1.18
SHKBP1-201ENST00000291842 RGPD5Q99666 1765 aa22.43■■□□□ 1.18
SHKBP1-201ENST00000291842 RAB11FIP3O75154 756 aa22.43■■□□□ 1.18
SHKBP1-201ENST00000291842 CWF19L2Q2TBE0 894 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-201ENST00000291842 NLRP2Q9NX02 1062 aa22.43■■□□□ 1.18
SHKBP1-201ENST00000291842 ERBB3P21860 1342 aa22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 AIMP1Q12904 312 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 SLC39A6Q13433 755 aa22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 PANK2Q9BZ23 570 aa22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 TRPM3Q9HCF6 1732 aaPredicted RBP22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 NCAPD2Q15021 1401 aa22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 CHMP4AQ9BY43 222 aa22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 C9orf78Q9NZ63 289 aaPredicted RBP22.42■■□□□ 1.18
SHKBP1-201ENST00000291842 CABLES1Q8TDN4 633 aa22.41■■□□□ 1.18
SHKBP1-201ENST00000291842 BAG4O95429 457 aaKnown RBP22.41■■□□□ 1.18
SHKBP1-201ENST00000291842 NOL8Q76FK4 1167 aaKnown RBP22.41■■□□□ 1.18
SHKBP1-201ENST00000291842 KIF1BPQ96EK5 621 aa22.41■■□□□ 1.18
SHKBP1-201ENST00000291842 OS9Q13438 667 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-201ENST00000291842 PI4K2BQ8TCG2 481 aa22.4■■□□□ 1.18
SHKBP1-201ENST00000291842 KSR2Q6VAB6 950 aa22.39■■□□□ 1.18
SHKBP1-201ENST00000291842 ATF3P18847 181 aa22.39■■□□□ 1.17
SHKBP1-201ENST00000291842 RAPGEF4Q8WZA2 1011 aa22.39■■□□□ 1.17
SHKBP1-201ENST00000291842 PA2G4Q9UQ80 394 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-201ENST00000291842 HEG1Q9ULI3 1381 aa22.38■■□□□ 1.17
SHKBP1-201ENST00000291842 MCCP23508 829 aa22.38■■□□□ 1.17
SHKBP1-201ENST00000291842 AOX1Q06278 1338 aa22.37■■□□□ 1.17
SHKBP1-201ENST00000291842 MCTP1Q6DN14 999 aa22.37■■□□□ 1.17
SHKBP1-201ENST00000291842 NUCB2P80303 420 aa22.36■■□□□ 1.17
SHKBP1-201ENST00000291842 CHRNA2Q15822 529 aa22.36■■□□□ 1.17
SHKBP1-201ENST00000291842 NFATC2IPQ8NCF5 419 aa22.36■■□□□ 1.17
SHKBP1-201ENST00000291842 TMX3Q96JJ7 454 aa22.36■■□□□ 1.17
SHKBP1-201ENST00000291842 UPF3BQ9BZI7 483 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-201ENST00000291842 GOLGA6L22H0YM25 854 aa22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 CSB-PGBD3P0DP91 1061 aa22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 CWC22Q9HCG8 908 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 CYP2E1P05181 493 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 MYL6BP14649 208 aa22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 SKOR2Q2VWA4 1001 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 CLEC17AQ6ZS10 378 aa22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 HYPKQ9NX55 129 aa22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 TMEM94Q12767 1356 aa22.35■■□□□ 1.17
SHKBP1-201ENST00000291842 FOXD4L5Q5VV16 416 aaPredicted RBP22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 ZNF790Q6PG37 636 aa22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 GAS2L3Q86XJ1 694 aa22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 FOXD4L4Q8WXT5 416 aaPredicted RBP22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 CHAMP1Q96JM3 812 aa22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 OVOS2A0A0G2JMS6 1433 aa22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 ALDH1L1O75891 902 aa22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 PDIA6Q15084 440 aa22.34■■□□□ 1.17
SHKBP1-201ENST00000291842 DDX21Q9NR30 783 aaKnown RBP eCLIP22.33■■□□□ 1.17
SHKBP1-201ENST00000291842 ZDHHC9Q9Y397 364 aa22.33■■□□□ 1.17
SHKBP1-201ENST00000291842 DDX49Q9Y6V7 483 aaKnown RBP22.33■■□□□ 1.17
SHKBP1-201ENST00000291842 CAMTA1Q9Y6Y1 1673 aa22.33■■□□□ 1.16
SHKBP1-201ENST00000291842 HSP90AB4PQ58FF6 505 aa22.33■■□□□ 1.16
SHKBP1-201ENST00000291842 GRPEL1Q9HAV7 217 aa22.33■■□□□ 1.16
SHKBP1-201ENST00000291842 NPHP3Q7Z494 1330 aa22.33■■□□□ 1.16
SHKBP1-201ENST00000291842 TATP17735 454 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 PIP4K2AP48426 406 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 SUCLG2Q96I99 432 aa22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 SLC52A2Q9HAB3 445 aa22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 KIF1AQ12756 1690 aa22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 PTMSP20962 102 aa22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 MRE11P49959 708 aa22.32■■□□□ 1.16
SHKBP1-201ENST00000291842 KDM6AO15550 1401 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 MST1RQ04912 1400 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 PHKG2P15735 406 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 MTX1Q13505 466 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 CWC27Q6UX04 472 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 CNTROBQ8N137 903 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 RIC3Q7Z5B4 369 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 CLASRPQ8N2M8 674 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 LINS1Q8NG48 757 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 KAZALD1Q96I82 304 aa22.31■■□□□ 1.16
SHKBP1-201ENST00000291842 SIPA1L3O60292 1781 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 ALS2Q96Q42 1657 aa22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 GRM8O00222 908 aa22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 ANAPC15P60006 121 aa22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 BICC1Q9H694 974 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 DDX58O95786 925 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-201ENST00000291842 MEGF6O75095 1541 aa22.29■■□□□ 1.16
SHKBP1-201ENST00000291842 SGSM2O43147 1006 aa22.29■■□□□ 1.16
SHKBP1-201ENST00000291842 NCLP19338 710 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-201ENST00000291842 ZNF496Q96IT1 587 aaPredicted RBP22.29■■□□□ 1.16
SHKBP1-201ENST00000291842 SPG7Q9UQ90 795 aa22.29■■□□□ 1.16
SHKBP1-201ENST00000291842 IGKV5-2P06315 115 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms