RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 C5P01031 1676 aa12.23□□□□□ -0.45
HMGN1-201ENST00000288344 PAXIP1Q6ZW49 1069 aaPredicted RBP12.23□□□□□ -0.45
HMGN1-201ENST00000288344 SP7Q8TDD2 431 aaPredicted RBP12.23□□□□□ -0.45
HMGN1-201ENST00000288344 UBR3Q6ZT12 1888 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 EVX2Q03828 476 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 GSE1Q14687 1217 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 RC3H1Q5TC82 1133 aaKnown RBP12.22□□□□□ -0.45
HMGN1-201ENST00000288344 COL23A1Q86Y22 540 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-201ENST00000288344 ADAMTS8Q9UP79 889 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 KCPQ6ZWJ8 1503 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 C4BP0C0L5 1744 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 COL5A3P25940 1745 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-201ENST00000288344 DLG5Q8TDM6 1919 aa12.22□□□□□ -0.45
HMGN1-201ENST00000288344 UBR2Q8IWV8 1755 aa12.21□□□□□ -0.45
HMGN1-201ENST00000288344 ATP6V1AP38606 617 aa12.2□□□□□ -0.46
HMGN1-201ENST00000288344 SLC39A6Q13433 755 aa12.2□□□□□ -0.46
HMGN1-201ENST00000288344 SMIM5Q71RC9 77 aa12.2□□□□□ -0.46
HMGN1-201ENST00000288344 VSIG10Q8N0Z9 540 aa12.2□□□□□ -0.46
HMGN1-201ENST00000288344 SLC16A10Q8TF71 515 aa12.2□□□□□ -0.46
HMGN1-201ENST00000288344 TJP1Q07157 1748 aa12.2□□□□□ -0.46
HMGN1-201ENST00000288344 KCNQ3O43525 872 aa12.19□□□□□ -0.46
HMGN1-201ENST00000288344 DCTN1Q14203 1278 aa12.19□□□□□ -0.46
HMGN1-201ENST00000288344 NFE2L2Q16236 605 aa12.19□□□□□ -0.46
HMGN1-201ENST00000288344 INTS5Q6P9B9 1019 aaKnown RBP12.19□□□□□ -0.46
HMGN1-201ENST00000288344 PNISRQ8TF01 805 aaKnown RBP12.19□□□□□ -0.46
HMGN1-201ENST00000288344 MTFR1LQ9H019 292 aa12.19□□□□□ -0.46
HMGN1-201ENST00000288344 CNTNAP4Q9C0A0 1308 aa12.19□□□□□ -0.46
HMGN1-201ENST00000288344 CYP19A1P11511 503 aaPredicted RBP12.18□□□□□ -0.46
HMGN1-201ENST00000288344 HMGB2P26583 209 aaKnown RBP12.18□□□□□ -0.46
HMGN1-201ENST00000288344 DCAF8Q5TAQ9 597 aa12.18□□□□□ -0.46
HMGN1-201ENST00000288344 ZNF790Q6PG37 636 aa12.18□□□□□ -0.46
HMGN1-201ENST00000288344 MCM10Q7L590 875 aa12.18□□□□□ -0.46
HMGN1-201ENST00000288344 SPON1Q9HCB6 807 aa12.18□□□□□ -0.46
HMGN1-201ENST00000288344 TFCP2L1Q9NZI6 479 aa12.18□□□□□ -0.46
HMGN1-201ENST00000288344 HEG1Q9ULI3 1381 aa12.18□□□□□ -0.46
HMGN1-201ENST00000288344 PTCD1O75127 700 aaKnown RBP12.17□□□□□ -0.46
HMGN1-201ENST00000288344 ZBTB7AO95365 584 aa12.17□□□□□ -0.46
HMGN1-201ENST00000288344 TMPOP42166 694 aaKnown RBP12.17□□□□□ -0.46
HMGN1-201ENST00000288344 ZNF496Q96IT1 587 aaPredicted RBP12.17□□□□□ -0.46
HMGN1-201ENST00000288344 CFAP44Q96MT7 982 aa12.17□□□□□ -0.46
HMGN1-201ENST00000288344 TRIM35Q9UPQ4 493 aa12.17□□□□□ -0.46
HMGN1-201ENST00000288344 RPS6KA4O75676 772 aa12.16□□□□□ -0.46
HMGN1-201ENST00000288344 SSFA2P28290 1259 aa12.16□□□□□ -0.46
HMGN1-201ENST00000288344 DNAJC10Q8IXB1 793 aa12.16□□□□□ -0.46
HMGN1-201ENST00000288344 RASEFQ8IZ41 740 aa12.16□□□□□ -0.46
HMGN1-201ENST00000288344 PNNQ9H307 717 aaKnown RBP12.16□□□□□ -0.46
HMGN1-201ENST00000288344 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.15□□□□□ -0.46
HMGN1-201ENST00000288344 TAF7Q15545 349 aaPredicted RBP12.15□□□□□ -0.46
HMGN1-201ENST00000288344 FLAD1Q8NFF5 587 aa12.15□□□□□ -0.46
HMGN1-201ENST00000288344 CRKLP46109 303 aaKnown RBP12.14□□□□□ -0.47
HMGN1-201ENST00000288344 HS6ST3Q8IZP7 471 aa12.14□□□□□ -0.47
HMGN1-201ENST00000288344 ARHGEF1Q92888 912 aaKnown RBP12.14□□□□□ -0.47
HMGN1-201ENST00000288344 RUNDC1Q96C34 613 aa12.14□□□□□ -0.47
HMGN1-201ENST00000288344 BTBD11A6QL63 1104 aa12.13□□□□□ -0.47
HMGN1-201ENST00000288344 RIPK4P57078 832 aa12.13□□□□□ -0.47
HMGN1-201ENST00000288344 TEFQ10587 303 aa12.13□□□□□ -0.47
HMGN1-201ENST00000288344 SPRYD3Q8NCJ5 442 aa12.13□□□□□ -0.47
HMGN1-201ENST00000288344 THUMPD2Q9BTF0 503 aaKnown RBP12.13□□□□□ -0.47
HMGN1-201ENST00000288344 EIF5P55010 431 aaKnown RBP12.12□□□□□ -0.47
HMGN1-201ENST00000288344 CCDC146Q8IYE0 955 aa12.12□□□□□ -0.47
HMGN1-201ENST00000288344 AK7Q96M32 723 aa12.12□□□□□ -0.47
HMGN1-201ENST00000288344 MIS18AQ9NYP9 233 aa12.12□□□□□ -0.47
HMGN1-201ENST00000288344 USP16Q9Y5T5 823 aa12.12□□□□□ -0.47
HMGN1-201ENST00000288344 SOS1Q07889 1333 aaPredicted RBP12.12□□□□□ -0.47
HMGN1-201ENST00000288344 KDM3BQ7LBC6 1761 aa12.12□□□□□ -0.47
HMGN1-201ENST00000288344 PRAMEF22A3QJZ6 481 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 GNPATO15228 680 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 EIF4A1P60842 406 aaKnown RBP12.11□□□□□ -0.47
HMGN1-201ENST00000288344 RTF1Q92541 710 aaKnown RBP12.11□□□□□ -0.47
HMGN1-201ENST00000288344 BABAM1Q9NWV8 329 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 CHL1O00533 1208 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 ANP32CO43423 234 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 ZNF853P0CG23 659 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 CHRM1P11229 460 aaPredicted RBP12.11□□□□□ -0.47
HMGN1-201ENST00000288344 GYS1P13807 737 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 TRAPPC3LQ5T215 181 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 FMNL2Q96PY5 1086 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 TSHZ2Q9NRE2 1034 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 CCDC87Q9NVE4 849 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 ZBTB1Q9Y2K1 713 aa12.11□□□□□ -0.47
HMGN1-201ENST00000288344 RTCBQ9Y3I0 505 aaKnown RBP12.11□□□□□ -0.47
HMGN1-201ENST00000288344 APAF1O14727 1248 aa12.1□□□□□ -0.47
HMGN1-201ENST00000288344 GIGYF1O75420 1035 aaPredicted RBP12.1□□□□□ -0.47
HMGN1-201ENST00000288344 FAM212AQ96EL1 285 aa12.1□□□□□ -0.47
HMGN1-201ENST00000288344 ARXQ96QS3 562 aa12.1□□□□□ -0.47
HMGN1-201ENST00000288344 SYT17Q9BSW7 474 aa12.1□□□□□ -0.47
HMGN1-201ENST00000288344 TEX13AQ9BXU3 409 aaPredicted RBP12.1□□□□□ -0.47
HMGN1-201ENST00000288344 TSPYL2Q9H2G4 693 aaPredicted RBP12.1□□□□□ -0.47
HMGN1-201ENST00000288344 BCL2L12Q9HB09 334 aa12.1□□□□□ -0.47
HMGN1-201ENST00000288344 RRP7AQ9Y3A4 280 aaKnown RBP12.1□□□□□ -0.47
HMGN1-201ENST00000288344 C4AP0C0L4 1744 aa12.09□□□□□ -0.47
HMGN1-201ENST00000288344 NBPF26B4DH59 902 aa12.09□□□□□ -0.47
HMGN1-201ENST00000288344 RIOK3O14730 519 aaKnown RBP12.09□□□□□ -0.47
HMGN1-201ENST00000288344 A1BGP04217 495 aa12.09□□□□□ -0.47
HMGN1-201ENST00000288344 TM4SF1P30408 202 aa12.09□□□□□ -0.47
HMGN1-201ENST00000288344 WDR43Q15061 677 aaKnown RBP eCLIP12.09□□□□□ -0.47
HMGN1-201ENST00000288344 NBPF10Q6P3W6 841 aaKnown RBP12.09□□□□□ -0.47
HMGN1-201ENST00000288344 NBPF15Q8N660 670 aa12.09□□□□□ -0.47
HMGN1-201ENST00000288344 MAPK8IP3Q9UPT6 1336 aa12.08□□□□□ -0.48
HMGN1-201ENST00000288344 PHF14O94880 888 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms