RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CTCFLQ8NI51 663 aaPredicted RBP13.37□□□□□ -0.27
USP53-201ENST00000274030 MAP3K2Q9Y2U5 619 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 SLC12A7Q9Y666 1083 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 AMOTQ4VCS5 1084 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 CPLX3Q8WVH0 158 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 WASLO00401 505 aaPredicted RBP13.36□□□□□ -0.27
USP53-201ENST00000274030 IFIT3O14879 490 aaKnown RBP13.36□□□□□ -0.27
USP53-201ENST00000274030 TBC1D2Q9BYX2 928 aa13.36□□□□□ -0.27
USP53-201ENST00000274030 DBF4Q9UBU7 674 aaPredicted RBP13.36□□□□□ -0.27
USP53-201ENST00000274030 GOLGA8BA8MQT2 603 aa13.36□□□□□ -0.27
USP53-201ENST00000274030 BIN1O00499 593 aa13.36□□□□□ -0.27
USP53-201ENST00000274030 SFPQP23246 707 aaKnown RBP eCLIP13.36□□□□□ -0.27
USP53-201ENST00000274030 ZNF444Q8N0Y2 327 aaPredicted RBP13.36□□□□□ -0.27
USP53-201ENST00000274030 UBXN4Q92575 508 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 TAF4BQ92750 862 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 POGZQ7Z3K3 1410 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 TXLNBQ8N3L3 684 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 NKTRP30414 1462 aaKnown RBP13.35□□□□□ -0.27
USP53-201ENST00000274030 EPRSP07814 1512 aaKnown RBP13.35□□□□□ -0.27
USP53-201ENST00000274030 SCAND2PQ9GZW5 306 aaPredicted RBP13.35□□□□□ -0.27
USP53-201ENST00000274030 LIMCH1Q9UPQ0 1083 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 ANKRD18BA2A2Z9 1011 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 ERICH4A6NGS2 130 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 WDR78Q5VTH9 848 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 ISM2Q6H9L7 571 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 UBE3BQ7Z3V4 1068 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 IQCA1Q86XH1 822 aa13.35□□□□□ -0.27
USP53-201ENST00000274030 PI4KAP2A4QPH2 592 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 KIAA0754O94854 1291 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 SLC5A1P13866 664 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 HSP90AB3PQ58FF7 597 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 PI4KAP1Q8N8J0 262 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 TNPO1Q92973 898 aaKnown RBP13.34□□□□□ -0.27
USP53-201ENST00000274030 ZNF287Q9HBT7 754 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 GOLGA8AA7E2F4 631 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 EIF3JO75822 258 aaKnown RBP13.34□□□□□ -0.27
USP53-201ENST00000274030 CHRNA2Q15822 529 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 VAT1LQ9HCJ6 419 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 USP25Q9UHP3 1055 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 SUPT6HQ7KZ85 1726 aaKnown RBP13.34□□□□□ -0.27
USP53-201ENST00000274030 TRMT1Q9NXH9 659 aaKnown RBP13.34□□□□□ -0.27
USP53-201ENST00000274030 CCDC183Q5T5S1 534 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 LDHAL6AQ6ZMR3 332 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 ANO10Q9NW15 660 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 CCDC196A0A1B0GTZ2 297 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 TBC1D9Q6ZT07 1266 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 ZNF397Q8NF99 534 aaPredicted RBP13.34□□□□□ -0.27
USP53-201ENST00000274030 HYPKQ9NX55 129 aa13.34□□□□□ -0.27
USP53-201ENST00000274030 C6orf229H3BNL8 230 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 NLRP5P59047 1200 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 ZSCAN30Q86W11 494 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 SH2B1Q9NRF2 756 aaPredicted RBP13.33□□□□□ -0.28
USP53-201ENST00000274030 MBIPQ9NS73 344 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 PTPN14Q15678 1187 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 CACNA2D4Q7Z3S7 1137 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 URI1O94763 535 aaPredicted RBP13.33□□□□□ -0.28
USP53-201ENST00000274030 IGHDP01880 384 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 PPP1R42Q7Z4L9 355 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 SCLT1Q96NL6 688 aa13.33□□□□□ -0.28
USP53-201ENST00000274030 LIG1P18858 919 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 FSIP1Q8NA03 581 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 CNNM3Q8NE01 707 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 NGLY1Q96IV0 654 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 ECHDC1Q9NTX5 307 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 TOP1P11387 765 aaKnown RBP13.32□□□□□ -0.28
USP53-201ENST00000274030 GJB2P29033 226 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 SSRP1Q08945 709 aaKnown RBP13.32□□□□□ -0.28
USP53-201ENST00000274030 SPA17Q15506 151 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 MICU3Q86XE3 530 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 RPGRQ92834 1020 aaKnown RBP13.32□□□□□ -0.28
USP53-201ENST00000274030 CLIP2Q9UDT6 1046 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 CCDC141Q6ZP82 1450 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 CCDC194A0A1B0GVG4 234 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 ABCC11Q96J66 1382 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 PPP1R12BO60237 982 aaPredicted RBP13.32□□□□□ -0.28
USP53-201ENST00000274030 NEBLO76041 1014 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 CD109Q6YHK3 1445 aa13.32□□□□□ -0.28
USP53-201ENST00000274030 EXOC5O00471 708 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
USP53-201ENST00000274030 IQCEQ6IPM2 695 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 KRT28Q7Z3Y7 464 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 USP16Q9Y5T5 823 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 ZRSR2Q15696 482 aaKnown RBP13.31□□□□□ -0.28
USP53-201ENST00000274030 KIF4BQ2VIQ3 1234 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 TNNT1P13805 278 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 CCDC148Q8NFR7 591 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 PLB1Q6P1J6 1458 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 LRPPRCP42704 1394 aaKnown RBP13.31□□□□□ -0.28
USP53-201ENST00000274030 HMGB1P09429 215 aaKnown RBP13.31□□□□□ -0.28
USP53-201ENST00000274030 FKBP15Q5T1M5 1219 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 PDCL2Q8N4E4 241 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 CCDC113Q9H0I3 377 aa13.31□□□□□ -0.28
USP53-201ENST00000274030 EVI5LQ96CN4 794 aa13.3□□□□□ -0.28
USP53-201ENST00000274030 TCEANC2Q96MN5 208 aa13.3□□□□□ -0.28
USP53-201ENST00000274030 RBM27Q9P2N5 1060 aaKnown RBP13.3□□□□□ -0.28
USP53-201ENST00000274030 PDIA4P13667 645 aaKnown RBP13.3□□□□□ -0.28
USP53-201ENST00000274030 TNIP1Q15025 636 aa13.3□□□□□ -0.28
USP53-201ENST00000274030 ANKRD18AQ8IVF6 992 aa13.3□□□□□ -0.28
USP53-201ENST00000274030 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
USP53-201ENST00000274030 MACROD2A1Z1Q3 448 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms