RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 ZKSCAN2Q63HK3 967 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 RALGAPBQ86X10 1494 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 AEBP1Q8IUX7 1158 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 ANKRD20A12PQ8NF67 263 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 FBXO41Q8TF61 875 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 BTG4Q9NY30 223 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 MTMR7Q9Y216 660 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 HIP1O00291 1037 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 SLC5A1P13866 664 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 KRT27Q7Z3Y8 459 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 CDK5RAP3Q96JB5 506 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 CCDC39Q9UFE4 941 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 LRRFIP2Q9Y608 721 aaKnown RBP9.28□□□□□ -0.92
USP3-201ENST00000268049 ANKRD36BQ8N2N9 1353 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 MYL6BP14649 208 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 NFE2L2Q16236 605 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 NIM1KQ8IY84 436 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 ZGPATQ8N5A5 531 aaKnown RBP9.28□□□□□ -0.92
USP3-201ENST00000268049 ACBD3Q9H3P7 528 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 LRP2BPQ9P2M1 347 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 CCDC70Q6NSX1 233 aa9.27□□□□□ -0.92
USP3-201ENST00000268049 RBM6P78332 1123 aaKnown RBP9.27□□□□□ -0.93
USP3-201ENST00000268049 CHMP5Q9NZZ3 219 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 A2ML1A8K2U0 1454 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 HSP90B2PQ58FF3 399 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 DDX17Q92841 729 aaKnown RBP9.27□□□□□ -0.93
USP3-201ENST00000268049 RILPL2Q969X0 211 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 ARHGAP31Q2M1Z3 1444 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 GOLGA6L19H0YKK7 550 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 CCDC191Q8NCU4 936 aa9.27□□□□□ -0.93
USP3-201ENST00000268049 BAG3O95817 575 aa9.26□□□□□ -0.93
USP3-201ENST00000268049 FAM98CQ17RN3 349 aaKnown RBP9.26□□□□□ -0.93
USP3-201ENST00000268049 DEF6Q9H4E7 631 aa9.26□□□□□ -0.93
USP3-201ENST00000268049 TSPYL1Q9H0U9 437 aa9.26□□□□□ -0.93
USP3-201ENST00000268049 ST18O60284 1047 aa9.26□□□□□ -0.93
USP3-201ENST00000268049 NASPP49321 788 aaPredicted RBP9.26□□□□□ -0.93
USP3-201ENST00000268049 ZC3H12CQ9C0D7 883 aaKnown RBP9.26□□□□□ -0.93
USP3-201ENST00000268049 SPON1Q9HCB6 807 aa9.26□□□□□ -0.93
USP3-201ENST00000268049 ANKRD18BA2A2Z9 1011 aa9.26□□□□□ -0.93
USP3-201ENST00000268049 CT47A1Q5JQC4 288 aaPredicted RBP9.26□□□□□ -0.93
USP3-201ENST00000268049 BBXQ8WY36 941 aaPredicted RBP9.26□□□□□ -0.93
USP3-201ENST00000268049 ZNF804AQ7Z570 1209 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 CLASRPQ8N2M8 674 aaKnown RBP9.25□□□□□ -0.93
USP3-201ENST00000268049 ABT1Q9ULW3 272 aaKnown RBP9.25□□□□□ -0.93
USP3-201ENST00000268049 IVNS1ABPQ9Y6Y0 642 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 GLRX3O76003 335 aaKnown RBP9.25□□□□□ -0.93
USP3-201ENST00000268049 PIK3R4Q99570 1358 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 TPM1P09493 284 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 LEKR1Q6ZMV7 388 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 SPC25Q9HBM1 224 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 NOD1Q9Y239 953 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 METP08581 1390 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 CREBRFQ8IUR6 639 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 PLXNC1O60486 1568 aa9.25□□□□□ -0.93
USP3-201ENST00000268049 CENPQQ7L2Z9 268 aaPredicted RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 MNS1Q8NEH6 495 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 GNPATO15228 680 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 KRT18P05783 430 aaKnown RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 METTL24Q5JXM2 366 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 PDZRN3Q9UPQ7 1066 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 HSP90AB2PQ58FF8 381 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 HOMER1Q86YM7 354 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 BECN2A8MW95 431 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 FOXD4L5Q5VV16 416 aaPredicted RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 LARP1Q6PKG0 1096 aaKnown RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 LARGE2Q8N3Y3 721 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 FOXD4L4Q8WXT5 416 aaPredicted RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 DCPSQ96C86 337 aaKnown RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 PES1O00541 588 aaKnown RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 TWISTNBQ3B726 338 aaPredicted RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 RBM26Q5T8P6 1007 aaKnown RBP9.24□□□□□ -0.93
USP3-201ENST00000268049 PICK1Q9NRD5 415 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 IFT57Q9NWB7 429 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 TMOD4Q9NZQ9 345 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 PTPRMP28827 1452 aa9.24□□□□□ -0.93
USP3-201ENST00000268049 CDC42BPBQ9Y5S2 1711 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 ALDH1B1P30837 517 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 USP8P40818 1118 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 MATR3P43243 847 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP3-201ENST00000268049 PABPC4Q13310 644 aaKnown RBP eCLIP9.23□□□□□ -0.939e-6■■■■□ 24.7
USP3-201ENST00000268049 PCDH11XQ9BZA7 1347 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 PCDH11YQ9BZA8 1340 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 FBLN1P23142 703 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 PDCL3Q9H2J4 239 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 PRDM15P57071 1507 aaPredicted RBP9.23□□□□□ -0.93
USP3-201ENST00000268049 GCC2Q8IWJ2 1684 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 UQCRHLA0A096LP55 91 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 NEBLO76041 1014 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 UQCRHP07919 91 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 CCDC173Q0VFZ6 552 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 IFIT5Q13325 482 aaKnown RBP9.23□□□□□ -0.93
USP3-201ENST00000268049 STK11IPQ8N1F8 1099 aa9.23□□□□□ -0.93
USP3-201ENST00000268049 EPS15P42566 896 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 CNBD1Q8NA66 436 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 VEZTQ9HBM0 779 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 ZBED9Q6R2W3 1325 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 TXLNAP40222 546 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 SRCIN1Q9C0H9 1055 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 SH2D4AQ9H788 454 aa9.22□□□□□ -0.93
USP3-201ENST00000268049 TAF7Q15545 349 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms