RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 CASC1Q6TDU7 716 aa15.91■□□□□ 0.14
CPSF6-201ENST00000266679 COL14A1Q05707 1796 aaKnown RBP15.9■□□□□ 0.14
CPSF6-201ENST00000266679 CEMIPQ8WUJ3 1361 aa15.9■□□□□ 0.14
CPSF6-201ENST00000266679 PNMA6EA0A0J9YXQ4 647 aa15.9■□□□□ 0.14
CPSF6-201ENST00000266679 KCNH5Q8NCM2 988 aa15.9■□□□□ 0.14
CPSF6-201ENST00000266679 LGR6Q9HBX8 967 aa15.9■□□□□ 0.14
CPSF6-201ENST00000266679 RTN4Q9NQC3 1192 aaKnown RBP15.9■□□□□ 0.14
CPSF6-201ENST00000266679 CCDC9Q9Y3X0 531 aaKnown RBP15.9■□□□□ 0.14
CPSF6-201ENST00000266679 TSHZ3Q63HK5 1081 aa15.89■□□□□ 0.13
CPSF6-201ENST00000266679 USP26Q9BXU7 913 aa15.89■□□□□ 0.13
CPSF6-201ENST00000266679 PHAXQ9H814 394 aaKnown RBP15.89■□□□□ 0.13
CPSF6-201ENST00000266679 LRRFIP2Q9Y608 721 aaKnown RBP15.89■□□□□ 0.13
CPSF6-201ENST00000266679 PDE1AP54750 535 aa15.88■□□□□ 0.13
CPSF6-201ENST00000266679 CIZ1Q9ULV3 898 aaPredicted RBP15.88■□□□□ 0.13
CPSF6-201ENST00000266679 EIF2S2P20042 333 aaKnown RBP15.88■□□□□ 0.13
CPSF6-201ENST00000266679 ATP8B2P98198 1209 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 RABEP1Q15276 862 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 ZNF530Q6P9A1 599 aaPredicted RBP15.87■□□□□ 0.13
CPSF6-201ENST00000266679 TNPO1Q92973 898 aaKnown RBP15.87■□□□□ 0.13
CPSF6-201ENST00000266679 GZF1Q9H116 711 aaPredicted RBP15.87■□□□□ 0.13
CPSF6-201ENST00000266679 BTG4Q9NY30 223 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 SLIT3O75094 1523 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 DDX11L8A8MPP1 907 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 LRRCC1Q9C099 1032 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 OSBPL3Q9H4L5 887 aa15.87■□□□□ 0.13
CPSF6-201ENST00000266679 KCNQ3O43525 872 aa15.86■□□□□ 0.13
CPSF6-201ENST00000266679 TRAK2O60296 914 aa15.86■□□□□ 0.13
CPSF6-201ENST00000266679 UBTFL1P0CB47 393 aaPredicted RBP15.86■□□□□ 0.13
CPSF6-201ENST00000266679 EIF4A1P60842 406 aaKnown RBP15.86■□□□□ 0.13
CPSF6-201ENST00000266679 RAB3GAP1Q15042 981 aa15.86■□□□□ 0.13
CPSF6-201ENST00000266679 ARXQ96QS3 562 aa15.86■□□□□ 0.13
CPSF6-201ENST00000266679 IBTKQ9P2D0 1353 aaPredicted RBP15.86■□□□□ 0.13
CPSF6-201ENST00000266679 CHRNA2Q15822 529 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 VPS72Q15906 364 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 USP44Q9H0E7 712 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 CHPF2Q9P2E5 772 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 AK9Q5TCS8 1911 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 SALL3Q9BXA9 1300 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 RGPD5Q99666 1765 aa15.85■□□□□ 0.13
CPSF6-201ENST00000266679 ERC2O15083 957 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 TEFQ10587 303 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 AKAP4Q5JQC9 854 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 MPRIPQ6WCQ1 1025 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 REC8O95072 547 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 GCP02774 474 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 MX1P20591 662 aa15.84■□□□□ 0.13
CPSF6-201ENST00000266679 ZC3H6P61129 1189 aaKnown RBP15.84■□□□□ 0.13
CPSF6-201ENST00000266679 PLEKHO1Q53GL0 409 aaPredicted RBP15.84■□□□□ 0.13
CPSF6-201ENST00000266679 SEPT12Q8IYM1 358 aa15.83■□□□□ 0.13
CPSF6-201ENST00000266679 PRDM11Q9NQV5 511 aa15.83■□□□□ 0.13
CPSF6-201ENST00000266679 CAMTA1Q9Y6Y1 1673 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 A0A0G2JS52 829 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 BTBD11A6QL63 1104 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 ANXA1P04083 346 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 L1TD1Q5T7N2 865 aaKnown RBP15.83■□□□□ 0.12
CPSF6-201ENST00000266679 ARHGEF25Q86VW2 580 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 ANKRD24Q8TF21 1146 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 GBP4Q96PP9 640 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 SRCIN1Q9C0H9 1055 aa15.83■□□□□ 0.12
CPSF6-201ENST00000266679 FAM98CQ17RN3 349 aaKnown RBP15.82■□□□□ 0.12
CPSF6-201ENST00000266679 SSFA2P28290 1259 aa15.82■□□□□ 0.12
CPSF6-201ENST00000266679 C1orf141Q5JVX7 400 aa15.82■□□□□ 0.12
CPSF6-201ENST00000266679 NCAPD2Q15021 1401 aa15.81■□□□□ 0.12
CPSF6-201ENST00000266679 HOXB7P09629 217 aa15.81■□□□□ 0.12
CPSF6-201ENST00000266679 TRIM6-TRIM34B2RNG4 842 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 RNMTO43148 476 aaKnown RBP15.8■□□□□ 0.12
CPSF6-201ENST00000266679 RILPL2Q969X0 211 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 IL1RAPL2Q9NP60 686 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 SIPA1L3O60292 1781 aaPredicted RBP15.8■□□□□ 0.12
CPSF6-201ENST00000266679 GOLGA6L3A6NEY3 463 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 AMOTQ4VCS5 1084 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 PPP1R42Q7Z4L9 355 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 DNAAF4Q8WXU2 420 aa15.8■□□□□ 0.12
CPSF6-201ENST00000266679 PI4KAP2A4QPH2 592 aa15.79■□□□□ 0.12
CPSF6-201ENST00000266679 PI4KAP1Q8N8J0 262 aa15.79■□□□□ 0.12
CPSF6-201ENST00000266679 SSH3Q8TE77 659 aa15.79■□□□□ 0.12
CPSF6-201ENST00000266679 STRN4Q9NRL3 753 aa15.79■□□□□ 0.12
CPSF6-201ENST00000266679 ST18O60284 1047 aa15.79■□□□□ 0.12
CPSF6-201ENST00000266679 ESYT1Q9BSJ8 1104 aa15.79■□□□□ 0.12
CPSF6-201ENST00000266679 ADCY9O60503 1353 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 FAM182BQ5T319 152 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 BEND3Q5T5X7 828 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 NUTM1Q86Y26 1132 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 STAP2Q9UGK3 403 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 AXIN2Q9Y2T1 843 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 THSD7AQ9UPZ6 1657 aa15.78■□□□□ 0.12
CPSF6-201ENST00000266679 SURF6O75683 361 aaKnown RBP15.78■□□□□ 0.12
CPSF6-201ENST00000266679 NBPF7P0C2Y1 421 aaPredicted RBP15.78■□□□□ 0.12
CPSF6-201ENST00000266679 OVOS2A0A0G2JMS6 1433 aa15.77■□□□□ 0.12
CPSF6-201ENST00000266679 FSD2A1L4K1 749 aa15.77■□□□□ 0.12
CPSF6-201ENST00000266679 SRGAP3O43295 1099 aa15.77■□□□□ 0.12
CPSF6-201ENST00000266679 POLA2Q14181 598 aa15.77■□□□□ 0.12
CPSF6-201ENST00000266679 SPATA31A5Q5VU36 1347 aa15.76■□□□□ 0.11
CPSF6-201ENST00000266679 SPATA31A7Q8IWB4 1347 aa15.76■□□□□ 0.11
CPSF6-201ENST00000266679 CHMLP26374 656 aa15.76■□□□□ 0.11
CPSF6-201ENST00000266679 CHMP4AQ9BY43 222 aa15.76■□□□□ 0.11
CPSF6-201ENST00000266679 AOX1Q06278 1338 aa15.75■□□□□ 0.11
CPSF6-201ENST00000266679 PRAMEF22A3QJZ6 481 aa15.75■□□□□ 0.11
CPSF6-201ENST00000266679 RAB11FIP3O75154 756 aa15.75■□□□□ 0.11
CPSF6-201ENST00000266679 PROSER3Q2NL68 480 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms