RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 USP42Q9H9J4 1324 aaKnown RBP13.04□□□□□ -0.32
VPS41-201ENST00000265745 UBR3Q6ZT12 1888 aa13.04□□□□□ -0.32
VPS41-201ENST00000265745 A0A0G2JLW4 131 aa13.03□□□□□ -0.32
VPS41-201ENST00000265745 SPDYE2BA6NHP3 402 aa13.03□□□□□ -0.32
VPS41-201ENST00000265745 SPDYE6P0CI01 402 aa13.03□□□□□ -0.32
VPS41-201ENST00000265745 SPDYE2Q495Y8 402 aa13.03□□□□□ -0.32
VPS41-201ENST00000265745 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
VPS41-201ENST00000265745 SOS1Q07889 1333 aaPredicted RBP13.03□□□□□ -0.32
VPS41-201ENST00000265745 MRC1P22897 1456 aa13.03□□□□□ -0.32
VPS41-201ENST00000265745 ZPR1O75312 459 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 FCHSD2O94868 740 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 U2AF1L5P0DN76 240 aaPredicted RBP13.02□□□□□ -0.33
VPS41-201ENST00000265745 TM4SF1P30408 202 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 U2AF1Q01081 240 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS41-201ENST00000265745 TEFQ10587 303 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 ZNF790Q6PG37 636 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 TTC5Q8N0Z6 440 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 PLCD3Q8N3E9 789 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 ZNF496Q96IT1 587 aaPredicted RBP13.02□□□□□ -0.33
VPS41-201ENST00000265745 ZBTB1Q9Y2K1 713 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 ZNF831Q5JPB2 1677 aa13.02□□□□□ -0.33
VPS41-201ENST00000265745 STARD3NLO95772 234 aa13.01□□□□□ -0.33
VPS41-201ENST00000265745 DPEP1P16444 411 aa13.01□□□□□ -0.33
VPS41-201ENST00000265745 DDR1Q08345 913 aa13.01□□□□□ -0.33
VPS41-201ENST00000265745 USPL1Q5W0Q7 1092 aa13.01□□□□□ -0.33
VPS41-201ENST00000265745 NARFQ9UHQ1 456 aa13.01□□□□□ -0.33
VPS41-201ENST00000265745 C10orf71Q711Q0 1435 aa13□□□□□ -0.33
VPS41-201ENST00000265745 CEMIPQ8WUJ3 1361 aa13□□□□□ -0.33
VPS41-201ENST00000265745 POLRMTO00411 1230 aaKnown RBP13□□□□□ -0.33
VPS41-201ENST00000265745 KCNA3P22001 575 aa13□□□□□ -0.33
VPS41-201ENST00000265745 C1QTNF8P60827 252 aa13□□□□□ -0.33
VPS41-201ENST00000265745 PXDNLA1KZ92 1463 aa12.99□□□□□ -0.33
VPS41-201ENST00000265745 CANXP27824 592 aaKnown RBP12.99□□□□□ -0.33
VPS41-201ENST00000265745 EIF5P55010 431 aaKnown RBP12.99□□□□□ -0.33
VPS41-201ENST00000265745 TEX13AQ9BXU3 409 aaPredicted RBP12.99□□□□□ -0.33
VPS41-201ENST00000265745 BCS1LQ9Y276 419 aa12.99□□□□□ -0.33
VPS41-201ENST00000265745 KCPQ6ZWJ8 1503 aa12.98□□□□□ -0.33
VPS41-201ENST00000265745 KCNQ3O43525 872 aa12.98□□□□□ -0.33
VPS41-201ENST00000265745 NFIXQ14938 502 aa12.98□□□□□ -0.33
VPS41-201ENST00000265745 BBXQ8WY36 941 aaPredicted RBP12.98□□□□□ -0.33
VPS41-201ENST00000265745 BCL2L12Q9HB09 334 aa12.98□□□□□ -0.33
VPS41-201ENST00000265745 HEG1Q9ULI3 1381 aa12.97□□□□□ -0.33
VPS41-201ENST00000265745 BTBD11A6QL63 1104 aa12.97□□□□□ -0.33
VPS41-201ENST00000265745 GIGYF1O75420 1035 aaPredicted RBP12.97□□□□□ -0.33
VPS41-201ENST00000265745 FMNL2Q96PY5 1086 aa12.97□□□□□ -0.33
VPS41-201ENST00000265745 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.97□□□□□ -0.33
VPS41-201ENST00000265745 CICQ96RK0 1608 aaPredicted RBP12.97□□□□□ -0.33
VPS41-201ENST00000265745 ATP10DQ9P241 1426 aa12.96□□□□□ -0.33
VPS41-201ENST00000265745 COL15A1P39059 1388 aa12.96□□□□□ -0.33
VPS41-201ENST00000265745 MYH14Q7Z406 1995 aaKnown RBP12.96□□□□□ -0.33
VPS41-201ENST00000265745 A0A087WZG4 1122 aa12.96□□□□□ -0.33
VPS41-201ENST00000265745 HTATSF1O43719 755 aaKnown RBP12.96□□□□□ -0.33
VPS41-201ENST00000265745 MCM10Q7L590 875 aa12.96□□□□□ -0.33
VPS41-201ENST00000265745 RTF1Q92541 710 aaKnown RBP12.96□□□□□ -0.33
VPS41-201ENST00000265745 PIM2Q9P1W9 311 aa12.96□□□□□ -0.33
VPS41-201ENST00000265745 ADCY9O60503 1353 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 SCN11AQ9UI33 1791 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 A1BGP04217 495 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 CHRNA5P30532 468 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 ARHGAP27Q6ZUM4 889 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 MIER1Q8N108 512 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 GPBP1L1Q9HC44 474 aaPredicted RBP12.95□□□□□ -0.34
VPS41-201ENST00000265745 COL5A3P25940 1745 aaPredicted RBP12.95□□□□□ -0.34
VPS41-201ENST00000265745 ADAMTS7Q9UKP4 1686 aa12.95□□□□□ -0.34
VPS41-201ENST00000265745 SERPINB2P05120 415 aa12.94□□□□□ -0.34
VPS41-201ENST00000265745 IL6STP40189 918 aaPredicted RBP12.94□□□□□ -0.34
VPS41-201ENST00000265745 DCTN1Q14203 1278 aa12.94□□□□□ -0.34
VPS41-201ENST00000265745 DALRD3Q5D0E6 543 aaKnown RBP12.94□□□□□ -0.34
VPS41-201ENST00000265745 USP16Q9Y5T5 823 aa12.94□□□□□ -0.34
VPS41-201ENST00000265745 PLEKHF1Q96S99 279 aa12.93□□□□□ -0.34
VPS41-201ENST00000265745 TBC1D2BQ9UPU7 963 aa12.93□□□□□ -0.34
VPS41-201ENST00000265745 CHD4Q14839 1912 aa12.93□□□□□ -0.34
VPS41-201ENST00000265745 TJP1Q07157 1748 aa12.93□□□□□ -0.34
VPS41-201ENST00000265745 PRAMEF22A3QJZ6 481 aa12.92□□□□□ -0.34
VPS41-201ENST00000265745 RGL2O15211 777 aa12.92□□□□□ -0.34
VPS41-201ENST00000265745 SNRPA1P09661 255 aaKnown RBP12.92□□□□□ -0.34
VPS41-201ENST00000265745 TAF7Q15545 349 aaPredicted RBP12.92□□□□□ -0.34
VPS41-201ENST00000265745 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
VPS41-201ENST00000265745 BICDL1Q6ZP65 573 aa12.92□□□□□ -0.34
VPS41-201ENST00000265745 ZNF526Q8TF50 670 aaPredicted RBP12.92□□□□□ -0.34
VPS41-201ENST00000265745 ZNF330Q9Y3S2 320 aaPredicted RBP12.92□□□□□ -0.34
VPS41-201ENST00000265745 C4AP0C0L4 1744 aa12.91□□□□□ -0.34
VPS41-201ENST00000265745 SENP3-EIF4A1A0A087X0R7 540 aa12.91□□□□□ -0.34
VPS41-201ENST00000265745 NPM2Q86SE8 214 aaKnown RBP12.91□□□□□ -0.34
VPS41-201ENST00000265745 CAMTA2O94983 1202 aa12.9□□□□□ -0.34
VPS41-201ENST00000265745 NEFMP07197 916 aa12.9□□□□□ -0.34
VPS41-201ENST00000265745 RALBP1Q15311 655 aa12.9□□□□□ -0.34
VPS41-201ENST00000265745 PAXIP1Q6ZW49 1069 aaPredicted RBP12.9□□□□□ -0.34
VPS41-201ENST00000265745 POTEDQ86YR6 584 aa12.9□□□□□ -0.34
VPS41-201ENST00000265745 MIS18AQ9NYP9 233 aa12.9□□□□□ -0.34
VPS41-201ENST00000265745 PIP4K2AP48426 406 aaPredicted RBP12.89□□□□□ -0.35
VPS41-201ENST00000265745 C9orf131Q5VYM1 1079 aa12.89□□□□□ -0.35
VPS41-201ENST00000265745 PNNQ9H307 717 aaKnown RBP12.89□□□□□ -0.35
VPS41-201ENST00000265745 NBPF26B4DH59 902 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 KIF3CO14782 793 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 DDX10Q13206 875 aaKnown RBP12.88□□□□□ -0.35
VPS41-201ENST00000265745 NFE2L2Q16236 605 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 NBPF10Q6P3W6 841 aaKnown RBP12.88□□□□□ -0.35
VPS41-201ENST00000265745 DZIP3Q86Y13 1208 aaKnown RBP12.88□□□□□ -0.35
VPS41-201ENST00000265745 C2CD5Q86YS7 1000 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms