RNA–Protein interactions for RNA: ENST00000264828.3

COL5A3-201, Transcript of collagen type V alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL5A3, Length 6,174 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3-201ENST00000264828 NAIPQ13075 1403 aa20.93■□□□□ 0.94
COL5A3-201ENST00000264828 TICAM2Q86XR7 235 aa20.92■□□□□ 0.94
COL5A3-201ENST00000264828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.92■□□□□ 0.94
COL5A3-201ENST00000264828 RNF187Q5TA31 235 aaPredicted RBP20.92■□□□□ 0.94
COL5A3-201ENST00000264828 TNPO1Q92973 898 aaKnown RBP20.92■□□□□ 0.94
COL5A3-201ENST00000264828 GDPD2Q9HCC8 539 aa20.92■□□□□ 0.94
COL5A3-201ENST00000264828 KIF2AO00139 706 aaPredicted RBP20.92■□□□□ 0.94
COL5A3-201ENST00000264828 NUP88Q99567 741 aaPredicted RBP20.92■□□□□ 0.94
COL5A3-201ENST00000264828 CCDC91Q7Z6B0 441 aa20.92■□□□□ 0.94
COL5A3-201ENST00000264828 KIF1BPQ96EK5 621 aa20.92■□□□□ 0.94
COL5A3-201ENST00000264828 DESP17661 470 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 IGHMBP2P38935 993 aaKnown RBP20.91■□□□□ 0.94
COL5A3-201ENST00000264828 IFFO1Q0D2I5 559 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 LUZP1Q86V48 1076 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 C11orf95C9JLR9 678 aaPredicted RBP20.91■□□□□ 0.94
COL5A3-201ENST00000264828 DUSP27Q5VZP5 1158 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 ABCC5O15440 1437 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 U3KPZ7 1027 aaPredicted RBP20.91■□□□□ 0.94
COL5A3-201ENST00000264828 MAP9Q49MG5 647 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 CGNQ9P2M7 1197 aaKnown RBP20.91■□□□□ 0.94
COL5A3-201ENST00000264828 GNAT3A8MTJ3 354 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 C8orf76Q96K31 380 aa20.91■□□□□ 0.94
COL5A3-201ENST00000264828 SEC63Q9UGP8 760 aaKnown RBP20.9■□□□□ 0.94
COL5A3-201ENST00000264828 TSG101Q99816 390 aa20.9■□□□□ 0.94
COL5A3-201ENST00000264828 FCHSD2O94868 740 aa20.9■□□□□ 0.94
COL5A3-201ENST00000264828 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.9■□□□□ 0.94
COL5A3-201ENST00000264828 WAPLQ7Z5K2 1190 aa20.89■□□□□ 0.93
COL5A3-201ENST00000264828 PPP1R12BO60237 982 aaPredicted RBP20.89■□□□□ 0.93
COL5A3-201ENST00000264828 CTNNBL1Q8WYA6 563 aaPredicted RBP20.89■□□□□ 0.93
COL5A3-201ENST00000264828 GLRX3O76003 335 aaKnown RBP20.89■□□□□ 0.93
COL5A3-201ENST00000264828 PRDM11Q9NQV5 511 aa20.89■□□□□ 0.93
COL5A3-201ENST00000264828 BIN1O00499 593 aa20.88■□□□□ 0.93
COL5A3-201ENST00000264828 MYD88Q99836 296 aa20.88■□□□□ 0.93
COL5A3-201ENST00000264828 SCAND2PQ9GZW5 306 aaPredicted RBP20.88■□□□□ 0.93
COL5A3-201ENST00000264828 RBM27Q9P2N5 1060 aaKnown RBP20.88■□□□□ 0.93
COL5A3-201ENST00000264828 SPDYE4A6NLX3 237 aa20.88■□□□□ 0.93
COL5A3-201ENST00000264828 CCT2P78371 535 aaKnown RBP20.88■□□□□ 0.93
COL5A3-201ENST00000264828 TBC1D2Q9BYX2 928 aa20.88■□□□□ 0.93
COL5A3-201ENST00000264828 CCDC8Q9H0W5 538 aaPredicted RBP20.88■□□□□ 0.93
COL5A3-201ENST00000264828 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.88■□□□□ 0.93
COL5A3-201ENST00000264828 POTEJP0CG39 1038 aa20.88■□□□□ 0.93
COL5A3-201ENST00000264828 TMC6Q7Z403 805 aa20.88■□□□□ 0.93
COL5A3-201ENST00000264828 GTF2F1P35269 517 aaKnown RBP eCLIP20.88■□□□□ 0.93
COL5A3-201ENST00000264828 RAB11FIP3O75154 756 aa20.87■□□□□ 0.93
COL5A3-201ENST00000264828 UBE4AQ14139 1066 aa20.87■□□□□ 0.93
COL5A3-201ENST00000264828 CCDC97Q96F63 343 aaPredicted RBP20.87■□□□□ 0.93
COL5A3-201ENST00000264828 PPP4R3BQ5MIZ7 849 aa20.87■□□□□ 0.93
COL5A3-201ENST00000264828 GSTTP1A0A1W2PQM5 241 aa20.87■□□□□ 0.93
COL5A3-201ENST00000264828 ZFP91Q96JP5 570 aaPredicted RBP20.87■□□□□ 0.93
COL5A3-201ENST00000264828 IFIT1P09914 478 aaKnown RBP20.86■□□□□ 0.93
COL5A3-201ENST00000264828 SF3B2Q13435 895 aaKnown RBP20.86■□□□□ 0.93
COL5A3-201ENST00000264828 CNNM3Q8NE01 707 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 URB2Q14146 1524 aaKnown RBP20.86■□□□□ 0.93
COL5A3-201ENST00000264828 POLR3DP05423 398 aaPredicted RBP20.86■□□□□ 0.93
COL5A3-201ENST00000264828 TDRD12Q587J7 1177 aaKnown RBP20.86■□□□□ 0.93
COL5A3-201ENST00000264828 F6X3S4 739 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 FSIP1Q8NA03 581 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 SSH1Q8WYL5 1049 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 ISM2Q6H9L7 571 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 ANAPC15P60006 121 aa20.86■□□□□ 0.93
COL5A3-201ENST00000264828 MACROD2A1Z1Q3 448 aa20.85■□□□□ 0.93
COL5A3-201ENST00000264828 ADCY5O95622 1261 aa20.85■□□□□ 0.93
COL5A3-201ENST00000264828 PDIA4P13667 645 aaKnown RBP20.85■□□□□ 0.93
COL5A3-201ENST00000264828 ZC3H6P61129 1189 aaKnown RBP20.85■□□□□ 0.93
COL5A3-201ENST00000264828 NAPBQ9H115 298 aa20.85■□□□□ 0.93
COL5A3-201ENST00000264828 MKNK2Q9HBH9 465 aa20.85■□□□□ 0.93
COL5A3-201ENST00000264828 RARSP54136 660 aaKnown RBP20.85■□□□□ 0.93
COL5A3-201ENST00000264828 SH2B1Q9NRF2 756 aaPredicted RBP20.85■□□□□ 0.93
COL5A3-201ENST00000264828 CETN2P41208 172 aa20.85■□□□□ 0.93
COL5A3-201ENST00000264828 TFIP11Q9UBB9 837 aaKnown RBP20.84■□□□□ 0.93
COL5A3-201ENST00000264828 GJB2P29033 226 aa20.84■□□□□ 0.93
COL5A3-201ENST00000264828 CHMP4BP1P59074 171 aa20.84■□□□□ 0.93
COL5A3-201ENST00000264828 MCM3P25205 808 aa20.84■□□□□ 0.93
COL5A3-201ENST00000264828 RANBP6O60518 1105 aaKnown RBP20.84■□□□□ 0.93
COL5A3-201ENST00000264828 PPFIA3O75145 1194 aa20.84■□□□□ 0.93
COL5A3-201ENST00000264828 SLC12A7Q9Y666 1083 aa20.84■□□□□ 0.93
COL5A3-201ENST00000264828 PRKCSHP14314 528 aaPredicted RBP20.83■□□□□ 0.93
COL5A3-201ENST00000264828 SSRP1Q08945 709 aaKnown RBP20.83■□□□□ 0.93
COL5A3-201ENST00000264828 CCDC144CPQ8IYA2 1237 aa20.83■□□□□ 0.93
COL5A3-201ENST00000264828 ZHX1Q9UKY1 873 aaPredicted RBP20.83■□□□□ 0.93
COL5A3-201ENST00000264828 GOLGA8BA8MQT2 603 aa20.83■□□□□ 0.93
COL5A3-201ENST00000264828 YEATS4O95619 227 aa20.83■□□□□ 0.92
COL5A3-201ENST00000264828 USHBP1Q8N6Y0 703 aa20.83■□□□□ 0.92
COL5A3-201ENST00000264828 AKAP2Q9Y2D5 859 aa20.83■□□□□ 0.92
COL5A3-201ENST00000264828 LIMCH1Q9UPQ0 1083 aa20.83■□□□□ 0.92
COL5A3-201ENST00000264828 PLEKHH1Q9ULM0 1364 aa20.82■□□□□ 0.92
COL5A3-201ENST00000264828 UNC13AQ9UPW8 1703 aa20.82■□□□□ 0.92
COL5A3-201ENST00000264828 USO1O60763 962 aaKnown RBP20.82■□□□□ 0.92
COL5A3-201ENST00000264828 PAFAH1B1P43034 410 aa20.82■□□□□ 0.92
COL5A3-201ENST00000264828 KCNH5Q8NCM2 988 aa20.82■□□□□ 0.92
COL5A3-201ENST00000264828 GOLGA8AA7E2F4 631 aa20.81■□□□□ 0.92
COL5A3-201ENST00000264828 VPS36Q86VN1 386 aa20.81■□□□□ 0.92
COL5A3-201ENST00000264828 PTCD1O75127 700 aaKnown RBP20.81■□□□□ 0.92
COL5A3-201ENST00000264828 HLTFQ14527 1009 aaKnown RBP eCLIP20.81■□□□□ 0.92
COL5A3-201ENST00000264828 CTR9Q6PD62 1173 aa20.81■□□□□ 0.92
COL5A3-201ENST00000264828 GCOM1H8Y6P7 765 aaPredicted RBP20.8■□□□□ 0.92
COL5A3-201ENST00000264828 ZNF213O14771 459 aa20.8■□□□□ 0.92
COL5A3-201ENST00000264828 MYZAPP0CAP1 466 aa20.8■□□□□ 0.92
COL5A3-201ENST00000264828 LARP1Q6PKG0 1096 aaKnown RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms