RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TANGO6Q9C0B7 1094 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 PARD3Q8TEW0 1356 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 PTCD1O75127 700 aaKnown RBP12.57□□□□□ -0.4
CD44-201ENST00000263398 PHF8Q9UPP1 1060 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 STX6O43752 255 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 ERLIN2O94905 339 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 MCM5P33992 734 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 ZHX3Q9H4I2 956 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 KIF18AQ8NI77 898 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 TSPYL1Q9H0U9 437 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 ABCF2Q9UG63 623 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 USHBP1Q8N6Y0 703 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 PBRM1Q86U86 1689 aa12.56□□□□□ -0.4
CD44-201ENST00000263398 GOLGA6L10A6NI86 522 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 MPRIPQ6WCQ1 1025 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 AMOTL2Q9Y2J4 779 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 TRAPPC8Q9Y2L5 1435 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 IQCEQ6IPM2 695 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 GDPD2Q9HCC8 539 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 ZSCAN12O43309 604 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 CCDC191Q8NCU4 936 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 NAPBQ9H115 298 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 EIF5P55010 431 aaKnown RBP12.55□□□□□ -0.4
CD44-201ENST00000263398 PPP1R42Q7Z4L9 355 aa12.55□□□□□ -0.4
CD44-201ENST00000263398 FAM83GA6ND36 823 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 NUP160Q12769 1436 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 A0A087WZG4 1122 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 NEMFO60524 1076 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 IFIT5Q13325 482 aaKnown RBP12.54□□□□□ -0.4
CD44-201ENST00000263398 CKAP2LQ8IYA6 745 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 CLIP2Q9UDT6 1046 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 ASXL1Q8IXJ9 1541 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 PIK3R4Q99570 1358 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 SSBP05455 408 aaKnown RBP eCLIP12.54□□□□□ -0.4
CD44-201ENST00000263398 UBE2HP62256 183 aa12.54□□□□□ -0.4
CD44-201ENST00000263398 TCOF1Q13428 1488 aaKnown RBP12.53□□□□□ -0.4
CD44-201ENST00000263398 ZNF213O14771 459 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 CAVIN2O95810 425 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 SPINK5Q9NQ38 1064 aaPredicted RBP12.53□□□□□ -0.4
CD44-201ENST00000263398 PI4KAP2A4QPH2 592 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 SDSP20132 328 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 GJB2P29033 226 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 SKIDA1Q1XH10 827 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 TMCO3Q6UWJ1 677 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 ANKRD44Q8N8A2 993 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 PI4KAP1Q8N8J0 262 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 TFIP11Q9UBB9 837 aaKnown RBP12.53□□□□□ -0.4
CD44-201ENST00000263398 GUCY1B3Q02153 619 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 MAP3K12Q12852 859 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 UVSSAQ2YD98 709 aa12.53□□□□□ -0.4
CD44-201ENST00000263398 TARBP1Q13395 1621 aaKnown RBP12.53□□□□□ -0.4
CD44-201ENST00000263398 GBP3Q9H0R5 595 aa12.52□□□□□ -0.4
CD44-201ENST00000263398 POLR3AO14802 1390 aaPredicted RBP12.52□□□□□ -0.4
CD44-201ENST00000263398 FOXO3O43524 673 aa12.52□□□□□ -0.4
CD44-201ENST00000263398 TOP1P11387 765 aaKnown RBP12.52□□□□□ -0.4
CD44-201ENST00000263398 C8orf34Q49A92 452 aa12.52□□□□□ -0.4
CD44-201ENST00000263398 TMX3Q96JJ7 454 aa12.52□□□□□ -0.4
CD44-201ENST00000263398 HMG20BQ9P0W2 317 aa12.52□□□□□ -0.4
CD44-201ENST00000263398 FSIP1Q8NA03 581 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 RHPN1Q8TCX5 695 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 MEIS3Q99687 375 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 PDCL3Q9H2J4 239 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 CEBPAP49715 358 aaPredicted RBP12.52□□□□□ -0.41
CD44-201ENST00000263398 ZNF165P49910 485 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 KIAA1328Q86T90 577 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 SNX21Q969T3 373 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 LARP6Q9BRS8 491 aaKnown RBP12.52□□□□□ -0.41
CD44-201ENST00000263398 TMOD3Q9NYL9 352 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 PRAG1Q86YV5 1406 aa12.52□□□□□ -0.41
CD44-201ENST00000263398 MINDY4BA8MYZ0 360 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 ANAPC15P60006 121 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 HSP90AB3PQ58FF7 597 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 PHAXQ9H814 394 aaKnown RBP12.51□□□□□ -0.41
CD44-201ENST00000263398 ZNF287Q9HBT7 754 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 PDE1AP54750 535 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 MAP3K2Q9Y2U5 619 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 PLCH2O75038 1416 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 KIAA0754O94854 1291 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 ADCY5O95622 1261 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 TNNT1P13805 278 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 GSDMDP57764 484 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 CTCFLQ8NI51 663 aaPredicted RBP12.51□□□□□ -0.41
CD44-201ENST00000263398 SAMD9Q5K651 1589 aa12.51□□□□□ -0.41
CD44-201ENST00000263398 GOLGA8BA8MQT2 603 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 TESK2Q96S53 571 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 RNF41Q9H4P4 317 aaPredicted RBP12.5□□□□□ -0.41
CD44-201ENST00000263398 ASXL2Q76L83 1435 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 URI1O94763 535 aaPredicted RBP12.5□□□□□ -0.41
CD44-201ENST00000263398 TSHZ3Q63HK5 1081 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 KLHL10Q6JEL2 608 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 IQCA1Q86XH1 822 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 PIBF1Q8WXW3 757 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 SLC12A7Q9Y666 1083 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 CCT2P78371 535 aaKnown RBP12.5□□□□□ -0.41
CD44-201ENST00000263398 CAVIN4Q5BKX8 364 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 ZNF397Q8NF99 534 aaPredicted RBP12.5□□□□□ -0.41
CD44-201ENST00000263398 CCDC148Q8NFR7 591 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 CCDC102AQ96A19 550 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 NEK1Q96PY6 1258 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 ZNF652Q9Y2D9 606 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms