RNA–Protein interactions for RNA: ENST00000261897.5

PRPF40B-201, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRPF40B, Length 3,602 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-201ENST00000261897 ZSCAN25Q6NSZ9 544 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 CNTROBQ8N137 903 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 INTS4Q96HW7 963 aaKnown RBP18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 ANKRD36BQ8N2N9 1353 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 ERCC6LQ2NKX8 1250 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 TEX35Q5T0J7 233 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 CCDC34Q96HJ3 373 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 TMEM51Q9NW97 253 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 ABCC10Q5T3U5 1492 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 HSP90AA4PQ58FG1 418 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 C10orf67Q8IYJ2 551 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 SIL1Q9H173 461 aa18.82■□□□□ 0.6
PRPF40B-201ENST00000261897 LRRC2Q9BYS8 371 aa18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 IL25Q9H293 177 aa18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 IFT140Q96RY7 1462 aa18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 USP27XA6NNY8 438 aa18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 URI1O94763 535 aaPredicted RBP18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 ANXA1P04083 346 aa18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 IRX5P78411 483 aaPredicted RBP18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 CALCOCO1Q9P1Z2 691 aa18.81■□□□□ 0.6
PRPF40B-201ENST00000261897 IFIT2P09913 472 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 NUTM2GQ5VZR2 741 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 SYT10Q6XYQ8 523 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 CDC37L1Q7L3B6 337 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 TTLL5Q6EMB2 1281 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 CCDC73Q6ZRK6 1079 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 TTC6Q86TZ1 520 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 CTNNA3Q9UI47 895 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 SNX14Q9Y5W7 946 aa18.8■□□□□ 0.6
PRPF40B-201ENST00000261897 VIRMAQ69YN4 1812 aaKnown RBP18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 CCDC69A6NI79 296 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 RUFY3Q7L099 469 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 ZNF397Q8NF99 534 aaPredicted RBP18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 UBXN4Q92575 508 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 KDM5AP29375 1690 aaKnown RBP18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 GNAI3P08754 354 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 ME1P48163 572 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 PTPN21Q16825 1174 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 TOMM22Q9NS69 142 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 PAXBP1Q9Y5B6 917 aa18.79■□□□□ 0.6
PRPF40B-201ENST00000261897 ARHGAP29Q52LW3 1261 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 CREBRFQ8IUR6 639 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 FBXO38Q6PIJ6 1188 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 PDILTQ8N807 584 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 SPTLC3Q9NUV7 552 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 KINO60870 393 aaKnown RBP18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 PDIA4P13667 645 aaKnown RBP18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 ZNF75DP51815 510 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 CUL4AQ13619 759 aa18.78■□□□□ 0.6
PRPF40B-201ENST00000261897 CCT4P50991 539 aaKnown RBP18.77■□□□□ 0.6
PRPF40B-201ENST00000261897 KMT5BQ4FZB7 885 aa18.77■□□□□ 0.6
PRPF40B-201ENST00000261897 AEBP2Q6ZN18 517 aaPredicted RBP18.77■□□□□ 0.6
PRPF40B-201ENST00000261897 SNW1Q13573 536 aaKnown RBP18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 TERF2Q15554 542 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 ADCK5Q3MIX3 580 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 RUFY2Q8WXA3 655 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 RTL1A6NKG5 1358 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 GABPB1Q06547 395 aaPredicted RBP18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 TMCO3Q6UWJ1 677 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 DNAI1Q9UI46 699 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 NR1I2O75469 434 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 CCDC144BQ3MJ40 725 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 PPP1R42Q7Z4L9 355 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 CCDC144CPQ8IYA2 1237 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 MRVI1Q9Y6F6 885 aa18.76■□□□□ 0.59
PRPF40B-201ENST00000261897 TMC6Q7Z403 805 aa18.75■□□□□ 0.59
PRPF40B-201ENST00000261897 FSD1Q9BTV5 496 aa18.75■□□□□ 0.59
PRPF40B-201ENST00000261897 ARGLU1Q9NWB6 273 aaPredicted RBP18.75■□□□□ 0.59
PRPF40B-201ENST00000261897 LMAN1P49257 510 aa18.75■□□□□ 0.59
PRPF40B-201ENST00000261897 MTMR6Q9Y217 621 aa18.75■□□□□ 0.59
PRPF40B-201ENST00000261897 SLU7O95391 586 aaKnown RBP18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 AMPHP49418 695 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 BLOC1S2Q6QNY1 142 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 AOPEPQ8N6M6 819 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 C9orf78Q9NZ63 289 aaPredicted RBP18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 DDX41Q9UJV9 622 aaKnown RBP18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 FLIIQ13045 1269 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 GYS2P54840 703 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 ANAPC15P60006 121 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 LARP1Q6PKG0 1096 aaKnown RBP18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 TXNDC2Q86VQ3 553 aa18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 CLASRPQ8N2M8 674 aaKnown RBP18.74■□□□□ 0.59
PRPF40B-201ENST00000261897 ANKRD7Q92527 254 aa18.73■□□□□ 0.59
PRPF40B-201ENST00000261897 ATP10AO60312 1499 aa18.73■□□□□ 0.59
PRPF40B-201ENST00000261897 CCDC8Q9H0W5 538 aaPredicted RBP18.73■□□□□ 0.59
PRPF40B-201ENST00000261897 BOLA2Q9H3K6 86 aa18.73■□□□□ 0.59
PRPF40B-201ENST00000261897 ZCCHC17Q9NP64 241 aaKnown RBP18.73■□□□□ 0.59
PRPF40B-201ENST00000261897 GPS2Q13227 327 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 BMS1Q14692 1282 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 EPC1Q9H2F5 836 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 SLFN14P0C7P3 912 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 HNRNPH2P55795 449 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 AIMP1Q12904 312 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 HSP90AB2PQ58FF8 381 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 DNAJC2Q99543 621 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 NPM1P06748 294 aaKnown RBP eCLIP18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 PDCP20941 246 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 ME3Q16798 604 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 CDC42BPAQ5VT25 1732 aa18.72■□□□□ 0.59
PRPF40B-201ENST00000261897 SAMD9LQ8IVG5 1584 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms