RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 ATP7BP35670 1465 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 UNC13BO14795 1591 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 RAD50Q92878 1312 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 TMEM132EQ6IEE7 984 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 CEP57L1Q8IYX8 460 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 SLC12A5Q9H2X9 1139 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 NBPF8Q3BBV2 869 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 ZNF397Q8NF99 534 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-202ENST00000261517 ERLIN1O75477 346 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 BAG3O95817 575 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 GBP3Q9H0R5 595 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 SEC63Q9UGP8 760 aaKnown RBP5.06□□□□□ -1.6
VPS13C-202ENST00000261517 PPP1R2P41236 205 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 CT47A1Q5JQC4 288 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-202ENST00000261517 VPS36Q86VN1 386 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 CASTP20810 708 aaKnown RBP5.06□□□□□ -1.6
VPS13C-202ENST00000261517 NASPP49321 788 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-202ENST00000261517 STK38Q15208 465 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 POTEB2H3BUK9 544 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 KIF4AO95239 1232 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 RAPGEF3O95398 923 aa5.06□□□□□ -1.6
VPS13C-202ENST00000261517 TTC41PQ6P2S7 1318 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 VPS37CA5D8V6 355 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 SNRPA1P09661 255 aaKnown RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 FAM114A1Q8IWE2 563 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 HOOK2Q96ED9 719 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 PCMTD1Q96MG8 357 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 PES1O00541 588 aaKnown RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 AMPD3Q01432 767 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 AMOTL2Q9Y2J4 779 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 CCDC172P0C7W6 258 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 IFIT5Q13325 482 aaKnown RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 MNS1Q8NEH6 495 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 BACH2Q9BYV9 841 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 ZSCAN16Q9H4T2 348 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 ADGRL3Q9HAR2 1447 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 PPP2R5BQ15173 497 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 NBPF1Q3BBV0 1214 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 DUSP27Q5VZP5 1158 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 USP37Q86T82 979 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 HOMER1Q86YM7 354 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 YTHDC2Q9H6S0 1430 aaKnown RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 DNAAF4Q8WXU2 420 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 LNPKQ9C0E8 428 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 EIF3JO75822 258 aaKnown RBP5.05□□□□□ -1.6
VPS13C-202ENST00000261517 DEF6Q9H4E7 631 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 PDZRN3Q9UPQ7 1066 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 GOLIM4O00461 696 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 TOM1O60784 492 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 IQCA1Q86XH1 822 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 IDI1Q13907 227 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 PPP4R3AQ6IN85 833 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 PPFIBP1Q86W92 1011 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 HSP90AB2PQ58FF8 381 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 EHBP1Q8NDI1 1231 aa5.05□□□□□ -1.6
VPS13C-202ENST00000261517 YEATS2Q9ULM3 1422 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 ANKRD18BA2A2Z9 1011 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 MX1P20591 662 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 MAGI3Q5TCQ9 1506 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 GSDMDP57764 484 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 TAF3Q5VWG9 929 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 C19orf44Q9H6X5 657 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 MSH5O43196 834 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 IGSF3O75054 1194 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 MAP9Q49MG5 647 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 EFCAB6Q5THR3 1501 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 TMEM266Q2M3C6 531 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CUL5Q93034 780 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 NEK4P51957 841 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 RARSP54136 660 aaKnown RBP5.04□□□□□ -1.6
VPS13C-202ENST00000261517 FAM43AQ8N2R8 423 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CWC25Q9NXE8 425 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-202ENST00000261517 ERBB4Q15303 1308 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 SRGAP3O43295 1099 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 AKAP4Q5JQC9 854 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 KRT23Q9C075 422 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 SBNO1A3KN83 1393 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 AACSQ86V21 672 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 DDX19AQ9NUU7 478 aaKnown RBP5.04□□□□□ -1.6
VPS13C-202ENST00000261517 ARHGAP31Q2M1Z3 1444 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 RNF17Q9BXT8 1623 aaKnown RBP5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CDC42BPBQ9Y5S2 1711 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 TUBBP07437 444 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 UVSSAQ2YD98 709 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 MYO1BO43795 1136 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CALM1P0DP23 149 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CALM2P0DP24 149 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CALM3P0DP25 149 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 CETN1Q12798 172 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 SAMD9LQ8IVG5 1584 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 PANK1Q8TE04 598 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 TSG101Q99816 390 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 SETBP1Q9Y6X0 1596 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 PZPP20742 1482 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 PLEKHG1Q9ULL1 1385 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 GOLGA6L10A6NI86 522 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 POLR3GO15318 223 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-202ENST00000261517 PDE4BQ07343 736 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 MCTP2Q6DN12 878 aa5.04□□□□□ -1.6
VPS13C-202ENST00000261517 AIDAQ96BJ3 306 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms