RNA–Protein interactions for RNA: ENST00000261007.9

CHRNA1-201, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 2 BASIC

Gene CHRNA1, Length 1,980 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-201ENST00000261007 KDM3BQ7LBC6 1761 aa13.17□□□□□ -0.3
CHRNA1-201ENST00000261007 ATF3P18847 181 aa13.17□□□□□ -0.3
CHRNA1-201ENST00000261007 CAVIN1Q6NZI2 390 aaKnown RBP13.17□□□□□ -0.3
CHRNA1-201ENST00000261007 UQCRHLA0A096LP55 91 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 GNAI2P04899 355 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 UQCRHP07919 91 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 RBM10P98175 930 aaKnown RBP13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 SASS6Q6UVJ0 657 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 DNAJC5Q9H3Z4 198 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 FKBP5Q13451 457 aaPredicted RBP13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 C1orf141Q5JVX7 400 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 LRSAM1Q6UWE0 723 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 MEIS3Q99687 375 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 FAM13BQ9NYF5 915 aa13.16□□□□□ -0.3
CHRNA1-201ENST00000261007 TEFQ10587 303 aa13.15□□□□□ -0.3
CHRNA1-201ENST00000261007 HDGFL1Q5TGJ6 251 aa13.15□□□□□ -0.3
CHRNA1-201ENST00000261007 ZNF530Q6P9A1 599 aaPredicted RBP13.15□□□□□ -0.3
CHRNA1-201ENST00000261007 USHBP1Q8N6Y0 703 aa13.15□□□□□ -0.3
CHRNA1-201ENST00000261007 ANKRD24Q8TF21 1146 aa13.15□□□□□ -0.3
CHRNA1-201ENST00000261007 PRIM1P49642 420 aaKnown RBP13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 SLC4A10Q6U841 1118 aa13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 G2E3Q7L622 706 aa13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 CADPS2Q86UW7 1296 aa13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 PIAS4Q8N2W9 510 aaPredicted RBP13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 RGPD2P0DJD1 1756 aa13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 NCLP19338 710 aaKnown RBP13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 PLEKHM2Q8IWE5 1019 aa13.14□□□□□ -0.31
CHRNA1-201ENST00000261007 NPHP3Q7Z494 1330 aa13.13□□□□□ -0.31
CHRNA1-201ENST00000261007 ZBTB7CA1YPR0 619 aa13.13□□□□□ -0.31
CHRNA1-201ENST00000261007 EIF4A1P60842 406 aaKnown RBP13.13□□□□□ -0.31
CHRNA1-201ENST00000261007 XPCQ01831 940 aaPredicted RBP13.13□□□□□ -0.31
CHRNA1-201ENST00000261007 USP26Q9BXU7 913 aa13.13□□□□□ -0.31
CHRNA1-201ENST00000261007 TMEM94Q12767 1356 aa13.13□□□□□ -0.31
CHRNA1-201ENST00000261007 MBD3O95983 291 aa13.12□□□□□ -0.31
CHRNA1-201ENST00000261007 TTC22Q5TAA0 569 aa13.12□□□□□ -0.31
CHRNA1-201ENST00000261007 LMOD2Q6P5Q4 547 aa13.12□□□□□ -0.31
CHRNA1-201ENST00000261007 CASC1Q6TDU7 716 aa13.12□□□□□ -0.31
CHRNA1-201ENST00000261007 ADAMTS7Q9UKP4 1686 aa13.12□□□□□ -0.31
CHRNA1-201ENST00000261007 ST18O60284 1047 aa13.12□□□□□ -0.31
CHRNA1-201ENST00000261007 F6X3S4 739 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 RNMTO43148 476 aaKnown RBP13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 GSPT1P15170 499 aaKnown RBP13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 GPT2Q8TD30 523 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 HDAC5Q9UQL6 1122 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 ERBB3P21860 1342 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 BTBD11A6QL63 1104 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 PRPF40AO75400 957 aaKnown RBP13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 ATP8B2P98198 1209 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 LRRC59Q96AG4 307 aaKnown RBP13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 OSBPL3Q9H4L5 887 aa13.11□□□□□ -0.31
CHRNA1-201ENST00000261007 AK9Q5TCS8 1911 aa13.1□□□□□ -0.31
CHRNA1-201ENST00000261007 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.31
CHRNA1-201ENST00000261007 TNS3Q68CZ2 1445 aa13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 UTP14CQ5TAP6 766 aaKnown RBP13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 LGR6Q9HBX8 967 aa13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 STRCP1A6NGW2 1772 aa13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 SIPA1L3O60292 1781 aaPredicted RBP13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 UBTFL1P0CB47 393 aaPredicted RBP13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 PPP4R3CPQ6ZMV5 832 aa13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 CCDC94Q9BW85 323 aaPredicted RBP13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 SRCIN1Q9C0H9 1055 aa13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 DBF4Q9UBU7 674 aaPredicted RBP13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 ZDHHC9Q9Y397 364 aa13.09□□□□□ -0.31
CHRNA1-201ENST00000261007 RAPGEF4Q8WZA2 1011 aa13.08□□□□□ -0.32
CHRNA1-201ENST00000261007 TMEM63CQ9P1W3 806 aa13.08□□□□□ -0.32
CHRNA1-201ENST00000261007 PXDNQ92626 1479 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 HEG1Q9ULI3 1381 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 KIAA2012Q0VF49 1180 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 MYRIPQ8NFW9 859 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 PRIMPOLQ96LW4 560 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 SPG7Q9UQ90 795 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 REC8O95072 547 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 TATP17735 454 aaPredicted RBP13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 PKP1Q13835 747 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 LRRCC1Q9C099 1032 aa13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 RBM27Q9P2N5 1060 aaKnown RBP13.07□□□□□ -0.32
CHRNA1-201ENST00000261007 AOX1Q06278 1338 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 COL18A1P39060 1754 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 RGPD5Q99666 1765 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 CPDO75976 1380 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 SYCE3A1L190 88 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 RAB11FIP3O75154 756 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 MCM2P49736 904 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 HMGN5P82970 282 aaKnown RBP13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 UVSSAQ2YD98 709 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 MPRIPQ6WCQ1 1025 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 DNAAF4Q8WXU2 420 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 NECTIN2Q92692 538 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 SYAP1Q96A49 352 aaPredicted RBP13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 CRYBG1Q9Y4K1 1723 aa13.06□□□□□ -0.32
CHRNA1-201ENST00000261007 EIF2S2P20042 333 aaKnown RBP13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 GTF2F1P35269 517 aaKnown RBP eCLIP13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 USP44Q9H0E7 712 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 AXIN2Q9Y2T1 843 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 ALDH1L1O75891 902 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 HSP90AB4PQ58FF6 505 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 KLHL34Q8N239 644 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 TSPY26PQ9H489 355 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 HYPKQ9NX55 129 aa13.05□□□□□ -0.32
CHRNA1-201ENST00000261007 CHPF2Q9P2E5 772 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms